{"id":17991412,"url":"https://github.com/nowosad/pollen","last_synced_at":"2025-03-25T23:32:09.354Z","repository":{"id":56934335,"uuid":"67614636","full_name":"Nowosad/pollen","owner":"Nowosad","description":"Tools for working with aerobiological data","archived":false,"fork":false,"pushed_at":"2023-01-31T11:44:50.000Z","size":779,"stargazers_count":4,"open_issues_count":1,"forks_count":2,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-03-20T22:53:06.714Z","etag":null,"topics":["aerobiological-data","aerobiology","gdd","growing-degree-days","pollen","r"],"latest_commit_sha":null,"homepage":"https://nowosad.github.io/pollen/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Nowosad.png","metadata":{"files":{"readme":"README.Rmd","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2016-09-07T14:31:15.000Z","updated_at":"2025-03-09T16:18:17.000Z","dependencies_parsed_at":"2023-02-16T18:46:27.082Z","dependency_job_id":null,"html_url":"https://github.com/Nowosad/pollen","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Nowosad%2Fpollen","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Nowosad%2Fpollen/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Nowosad%2Fpollen/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Nowosad%2Fpollen/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Nowosad","download_url":"https://codeload.github.com/Nowosad/pollen/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":245562147,"owners_count":20635878,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["aerobiological-data","aerobiology","gdd","growing-degree-days","pollen","r"],"created_at":"2024-10-29T19:21:59.275Z","updated_at":"2025-03-25T23:32:04.991Z","avatar_url":"https://github.com/Nowosad.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"---\noutput: github_document\n---\n\n\u003c!-- README.md is generated from README.Rmd. Please edit that file --\u003e\n\n```{r, echo = FALSE}\nknitr::opts_chunk$set(\n  collapse = TRUE,\n  comment = \"#\u003e\",\n  fig.path = \"figure/\",\n  fig.height = 1\n)\n```\n\n# Pollen - tools for working with aerobiological data\n\n[![R-CMD-check](https://github.com/Nowosad/pollen/workflows/pkgdown/badge.svg)](https://github.com/Nowosad/pollen/actions)\n[![codecov](https://app.codecov.io/gh/Nowosad/pollen/branch/master/graph/badge.svg)](https://app.codecov.io/gh/Nowosad/pollen)\n[![CRAN version](http://www.r-pkg.org/badges/version/pollen)](https://cran.r-project.org/package=pollen)\n[![CRAN RStudio mirror downloads](http://cranlogs.r-pkg.org/badges/pollen)](https://cran.r-project.org/package=pollen)\n\n```{r, echo=FALSE, eval=FALSE}\n\u003c!--[![Coverage Status](https://img.shields.io/codecov/c/github/hadley/lubridate/master.svg)](https://codecov.io/github/hadley/lubridate?branch=master)--\u003e\n```\n\nThe **pollen** package is a set of functions for working with aerobiological data. \nIt takes care of some of the most widely use aerobiological calculations, including determination of pollen season limits, replacement of outliers (Kasprzyk and Walanus (2014)), and calculation of growing degree days (Baskerville and Emin (1969)).\n\n## Installation\n\nGet the released version from CRAN:\n\n```R\ninstall.packages(\"pollen\")\n```\nOr the development version from github:\n\n```R\nremotes::install_github(\"nowosad/pollen\")\n```\n\n## Examples\n\n```{r, lib, eval=TRUE}\nlibrary(pollen)\n```\n\n```{r, dat, eval=TRUE}\ndata(\"pollen_count\")\nhead(pollen_count)\n```\n\n### Pollen season calculation\n\n```{r, df, eval=TRUE}\ndf \u003c- subset(pollen_count, site == \"Oz\")\npollen_season(value = df$birch, date = df$date, method = \"95\")\n```\n\nMore examples of pollen seasons' calculations can be found in [the first package vignette](https://jakubnowosad.com/pollen/articles/intro.html).\n\n### Growing degree days (GDD) calculation\n\nExamples of Growing degree days (GDD) calculations can be found in [the second package vignette](https://jakubnowosad.com/pollen/articles/gdd.html).\n\n## Citation\n\nTo cite the `pollen` package in publications, please use:\n\nNowosad, Jakub (2018). pollen: Analysis of Aerobiological Data. R package version 0.71.0.\n  https://github.com/Nowosad/pollen\n\nLaTeX/BibTeX version can be obtained with:\n\n```\nlibrary(pollen)\ncitation(\"pollen\")\n```\n\n## Contributions\n\n[Feel free to submit issues and enhancement requests.](https://github.com/Nowosad/pollen/issues)\n\n## References\n\n- Baskerville, G., \u0026 Emin, P.: 1969. Rapid Estimation of Heat Accumulation from Maximum and Minimum Temperatures. Ecology, 50(3), 514-517. https://doi.org/10.2307/1933912\n- Kasprzyk, I. and A. Walanus.: 2014. Gamma, Gaussian and Logistic Distribution Models for Airborne Pollen Grains and Fungal Spore Season Dynamics, Aerobiologia 30(4), 369-83.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fnowosad%2Fpollen","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fnowosad%2Fpollen","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fnowosad%2Fpollen/lists"}