{"id":31844821,"url":"https://github.com/nsls2/hex-profile-collection","last_synced_at":"2026-01-20T17:44:52.453Z","repository":{"id":45151305,"uuid":"444541815","full_name":"NSLS2/hex-profile-collection","owner":"NSLS2","description":"Profile collection repository for the NSLS-II HEX beamline","archived":false,"fork":false,"pushed_at":"2025-10-07T19:38:24.000Z","size":405,"stargazers_count":0,"open_issues_count":2,"forks_count":2,"subscribers_count":6,"default_branch":"main","last_synced_at":"2025-10-07T21:25:05.301Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"bsd-3-clause","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/NSLS2.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2022-01-04T19:37:55.000Z","updated_at":"2025-10-07T19:38:28.000Z","dependencies_parsed_at":"2023-12-21T19:08:16.756Z","dependency_job_id":"c80ae105-ba0d-42d2-a730-ae7bf74c15de","html_url":"https://github.com/NSLS2/hex-profile-collection","commit_stats":null,"previous_names":["nsls2/hex-profile-collection"],"tags_count":1,"template":false,"template_full_name":null,"purl":"pkg:github/NSLS2/hex-profile-collection","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/NSLS2%2Fhex-profile-collection","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/NSLS2%2Fhex-profile-collection/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/NSLS2%2Fhex-profile-collection/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/NSLS2%2Fhex-profile-collection/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/NSLS2","download_url":"https://codeload.github.com/NSLS2/hex-profile-collection/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/NSLS2%2Fhex-profile-collection/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":279010667,"owners_count":26084785,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-10-12T02:00:06.719Z","response_time":53,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-10-12T07:50:58.186Z","updated_at":"2025-10-12T07:50:59.369Z","avatar_url":"https://github.com/NSLS2.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# NSLS-II-HEX Bluesky Profile\n\n## Conda environment\n\nRequires `2024-2.3-py311-tiled` conda environment, with overlays w/ non-tagged source installs of ophyd-async, bluesky, hextools, \n\n### Update on 5/15/24:\n\nWe are switching to the latest conda environment deployed for the 2024 Cycle 2 - `2024-2.0-py310-tiled`.\nThe environment does not provide the latest bluesky code with the `TiledWriter` callback, unreleased to date.\nWe installed the latest bluesky into overlays with the following command:\n\n```bash\n$ pip install --prefix=/nsls2/data/hex/shared/config/bluesky_overlays/2024-2.0-py310-tiled -I --no-deps --no-build-isolation git+https://github.com/bluesky/bluesky.git@mainCollecting git+https://github.com/bluesky/bluesky.git@main\n  Cloning https://github.com/bluesky/bluesky.git (to revision main) to /tmp/pip-req-build-2kav0g4e\n  Running command git clone --filter=blob:none --quiet https://github.com/bluesky/bluesky.git /tmp/pip-req-build-2kav0g4e\n  Resolved https://github.com/bluesky/bluesky.git to commit bc8222be2e099a00baafcede1d761d61b213bf19\n  Preparing metadata (pyproject.toml) ... done\nBuilding wheels for collected packages: bluesky\n  Building wheel for bluesky (pyproject.toml) ... done\n  Created wheel for bluesky: filename=bluesky-1.13.0a4.dev175+gbc8222be-py3-none-any.whl size=310491 sha256=5ca5f93a2471e4d9ebac3d521789ae87c5aed033168a1c7933c726f7cafd2673\n  Stored in directory: /tmp/pip-ephem-wheel-cache-afvgkk8r/wheels/41/2d/04/e7440b17766879028a7fb6632b555f48338c394596dda55995\nSuccessfully built bluesky\nInstalling collected packages: bluesky\nSuccessfully installed bluesky-1.13.0a4.dev175+gbc8222be\n```\n\n```bash\n$ pip install --prefix=/nsls2/data/hex/shared/config/bluesky_overlays/2024-2.0-py310-tiled -I --no-deps --no-build-isolation ophyd-async --pre\nCollecting ophyd-async\n  Downloading ophyd_async-0.3a4-py3-none-any.whl.metadata (6.3 kB)\nDownloading ophyd_async-0.3a4-py3-none-any.whl (90 kB)\n   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 90.7/90.7 kB 1.5 MB/s eta 0:00:00\nInstalling collected packages: ophyd-async\nSuccessfully installed ophyd-async-0.3a4\n```\n\nTo use it with `bsui`:\n```bash\nBS_PYTHONPATH=/nsls2/data/hex/shared/config/bluesky_overlays/2024-2.0-py310-tiled BS_ENV=2024-2.0-py310-tiled bsui\n```\n\n\n### Source-installed repositories\n\n- `ophyd-async`: https://github.com/NSLS-II-TST/ophyd-async/tree/add-vimba-support (based on the https://github.com/bluesky/ophyd-async/pull/154 PR branch)\n- `bluesky`: https://github.com/genematx/bluesky/tree/add-tiled-writer and https://github.com/bluesky/bluesky/pull/1660 - merged, see the overlays configuration above\n- `tiled`: https://github.com/danielballan/tiled/tree/register-hdf5-internal (merged https://github.com/bluesky/tiled/pull/687) - released via tiled v0.1.0a117/a118, already in the 2024-2.0-py310-tiled.\n\n\n## Tiled configuration\n\nOUTDATED:\n\n~~Runs locally on `xf27id1-ws2` machine. Check it with:~~\n\n```bash\n$ systemctl status tiled\n```\n\nNew configuration: TBD\n\n\n## Prefect configuration\n\n- https://github.com/NSLS-II-HEX/workflows/tree/export-nxs and https://github.com/NSLS-II-HEX/workflows/pull/4\n~~- conda environment: `/nsls2/users/workflow-hex/conda_envs/dev`~~\n- conda environment: `...`\n\n\n## PandA IOC\n\n- The IOC runs on `xf27id1-ioc1` (Panda 1)\n- Source from https://github.com/PandABlocks/PandABlocks-ioc/pull/102 (https://github.com/jwlodek/PandABlocks-ioc/tree/add-create-dir-depth) - WIP\n\n\n## PandA configuration\n\nhttp://xf27id1-panda1.nsls2.bnl.local:8008/gui/PANDA/layout/\n\n![PandA config for HEX tomo](img/panda.png)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fnsls2%2Fhex-profile-collection","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fnsls2%2Fhex-profile-collection","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fnsls2%2Fhex-profile-collection/lists"}