{"id":48236031,"url":"https://github.com/nuest/reproducible-research-giscience-longitudinal-study","last_synced_at":"2026-04-04T20:01:02.630Z","repository":{"id":317334193,"uuid":"638822829","full_name":"nuest/reproducible-research-giscience-longitudinal-study","owner":"nuest","description":null,"archived":false,"fork":false,"pushed_at":"2025-09-30T07:43:20.000Z","size":8547,"stargazers_count":0,"open_issues_count":3,"forks_count":0,"subscribers_count":3,"default_branch":"main","last_synced_at":"2025-09-30T09:26:13.866Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"HTML","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"apache-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/nuest.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2023-05-10T07:21:42.000Z","updated_at":"2025-09-30T07:43:24.000Z","dependencies_parsed_at":"2025-09-30T09:26:17.053Z","dependency_job_id":null,"html_url":"https://github.com/nuest/reproducible-research-giscience-longitudinal-study","commit_stats":null,"previous_names":["nuest/reproducible-research-giscience-longitudinal-study"],"tags_count":null,"template":false,"template_full_name":null,"purl":"pkg:github/nuest/reproducible-research-giscience-longitudinal-study","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nuest%2Freproducible-research-giscience-longitudinal-study","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nuest%2Freproducible-research-giscience-longitudinal-study/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nuest%2Freproducible-research-giscience-longitudinal-study/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nuest%2Freproducible-research-giscience-longitudinal-study/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/nuest","download_url":"https://codeload.github.com/nuest/reproducible-research-giscience-longitudinal-study/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nuest%2Freproducible-research-giscience-longitudinal-study/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":31411638,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-04-04T19:29:44.979Z","status":"ssl_error","status_checked_at":"2026-04-04T19:29:11.535Z","response_time":60,"last_error":"SSL_connect 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Protocol--\u003e\n\n[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.17733628.svg)](https://doi.org/10.5281/zenodo.17733628)\n\nThis is the data and software repo to support the computational analysis related to the paper *Longitudinal assessment of research in GIScience domain shows a positive impact of reproducible research practices*. \nThis study was coordinated by Frank Ostermann \u003ca href=\"https://orcid.org/0000-0002-9317-8291\"\u003e\u003cimg alt=\"ORCID logo\" src=\"https://info.orcid.org/wp-content/uploads/2019/11/orcid_16x16.png\" width=\"16\" height=\"16\"/\u003e\u003c/a\u003e,\nDaniel Nüst \u003ca href=\"https://orcid.org/0000-0002-0024-5046\"\u003e\u003cimg alt=\"ORCID logo\" src=\"https://info.orcid.org/wp-content/uploads/2019/11/orcid_16x16.png\" width=\"16\" height=\"16\"/\u003e\u003c/a\u003e, and \nCarlos Granell \u003ca href=\"https://orcid.org/0000-0003-1004-9695\"\u003e\u003cimg alt=\"ORCID logo\" src=\"https://info.orcid.org/wp-content/uploads/2019/11/orcid_16x16.png\" width=\"16\" height=\"16\"/\u003e\u003c/a\u003e.\n\nAcknowledgement: [AGILE](https://agile-gi.eu/)...\n\n## Study goals and overall methodology\n\n\nTODO: \n\nData...\n\n- AGILE \"averages\" dataset as csv from previous paper\n- AGILE dataset, full papers for years ... - ...\n- GIScience dataset, full papers for years xxxx, yyyy, ...\n- citation data?\n\nMethods...\n\n- alluvial plot for both pre and post intervention AGILE\n- alluvial plot for GIScience matching pre/post years\n- timeline plot of actual data points and averages, wich old AGILE dataset in light colour for loose reference\n\n\n## Contents\n\n- `data`: contains several CSV files that contained assessment data of the eligible conference papers.\n- `data-clean`: contains a processed CSV file ready for analysis and a `README` file (data sheet) to describe each column.\n- `figs`: contains generated figures from notebooks.\n- `*.qmd` files: [Quarto](https://quarto.org/) documents for data preparation and analysis.\n- `*.ipynb` files: [Jupyter notebooks](https://jupyter.org/) for data analysis.\n- `install.R`: R libraries used by Quarto documents.\n- `06_environemnt.yml`: Python libraries used by Jupyter notebooks.\n- `Dockerfile` \u0026 `compose.yml`: contains a Dockerfile to build a Docker image using [Docker Compose](https://docs.docker.com/compose/).\n- `manuscript`: contains the manuscript LaTeX source files.\n\n## Reproducibility\n\n### Reproducibility setup\n\n- TODO: create one common configuration for R/Python. Now, R notebooks are based on `rocker/rstudio:4.4`, and python notebooks on conda.\n\n#### Reproduce online with Binder\n\n[![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/)\n\n\u003e [!NOTE]\n\u003e Building the computing enviroment in Binder can be slow.\n\n#### Reproduce locally with Docker\n\nTODO\n\n### Mapping of code to figures and tables in the paper\n\nThe following scripts and notebooks each generate figures or tables in the published paper:\n\n- `02_methods.qmd` generates **Table 1** and **Table 2**.\n- `03_results_reprolevels.qmd` generates **Figure 2**, **Figure 3**, and **Table 3**.\n- `04_results_hypotheses.ipynb`generates **Table 4**, **Table 5**, **Table 6**, and **Table 7**.\n- `05_results_assessprocess.qmd` generates **Table 8**, **Figure 4**, **Table 9**, and **Table 10**.\n- `06_discussion.qmd` generates **Figure 5**.\n\n## License\n\nThe **code** in this repository (notebooks, scripts) is licensed under the [Apache License 2.0](https://www.apache.org/licenses/LICENSE-2.0). See the [LICENSE](LICENSE) file for details.\nThe **data** in this repository (/data, /data-clean) is licensed under [Create Commons Attribution 4.0 International](https://creativecommons.org/licenses/by/4.0/) (CC BY 4.0). See the [LICENSE-DATA](LICENSE-DATA) file for details.\nThe **text** and **figures** in this repository (/manuscript, /figs) are licensed under [Create Commons Attribution 4.0 International](https://creativecommons.org/licenses/by/4.0/) (CC BY 4.0). See the [LICENSE-MANUSCRIPT](LICENSE-DATA) file for details.\n\n\u003c!--\nInternal links:\n\n- https://drive.google.com/drive/folders/1pD0fJ6-vOpRJpmLScFuw2QVAg8mVt7e5\n- https://www.overleaf.com/project/67407016f251c6e9fb1c3143\n\n--\u003e","funding_links":[],"categories":[],"sub_categories":[],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fnuest%2Freproducible-research-giscience-longitudinal-study","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fnuest%2Freproducible-research-giscience-longitudinal-study","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fnuest%2Freproducible-research-giscience-longitudinal-study/lists"}