{"id":25977595,"url":"https://github.com/nylander/ptemplate","last_synced_at":"2025-10-19T04:17:54.449Z","repository":{"id":146538720,"uuid":"50356959","full_name":"nylander/ptemplate","owner":"nylander","description":"ptemplate -- A project template","archived":false,"fork":false,"pushed_at":"2024-01-25T11:18:11.000Z","size":12,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":2,"default_branch":"master","last_synced_at":"2024-01-26T12:11:19.761Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Shell","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/nylander.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null}},"created_at":"2016-01-25T14:45:22.000Z","updated_at":"2024-01-25T10:51:15.000Z","dependencies_parsed_at":"2024-01-25T12:01:32.975Z","dependency_job_id":"a58917b0-fcfb-4e9e-b0e0-2a8d0d11cb14","html_url":"https://github.com/nylander/ptemplate","commit_stats":null,"previous_names":[],"tags_count":2,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nylander%2Fptemplate","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nylander%2Fptemplate/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nylander%2Fptemplate/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nylander%2Fptemplate/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/nylander","download_url":"https://codeload.github.com/nylander/ptemplate/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":241966989,"owners_count":20050324,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-03-05T04:38:39.488Z","updated_at":"2025-10-19T04:17:54.330Z","avatar_url":"https://github.com/nylander.png","language":"Shell","funding_links":[],"categories":[],"sub_categories":[],"readme":"# ptemplate - A project template\n\n- Last modified: tor jan 25, 2024  12:17\n- Sign: JN\n\nInspired by [A Quick Guide to Organizing Computational Biology\nProjects](http://dx.doi.org/10.1371/journal.pcbi.1000424)\n\nTo initialize a new `project`, run these three steps:\n\n    $ git clone https://github.com/nylander/ptemplate.git project\n    $ cd project\n    $ sh bin/init.sh\n\nThis will create the following file structure:\n\n    ptemplate/\n    ├── analyses\n    │   └── README.md\n    ├── bin\n    │   ├── fasta2tab\n    │   ├── README.md\n    │   └── tab2fasta\n    ├── data\n    │   └── README.md\n    ├── doc\n    │   └── README.md\n    ├──.editorconfig\n    ├──.gitignore\n    ├──.git/\n    ├── old/\n    ├── raw-data\n    │   └── README.md\n    ├── README.md\n    ├── results\n    │   └── README.md\n    ├── src\n    │   ├── fasta_parser.pl\n    │   ├── fasta_parser.py\n    │   └── README.md\n    └── tmp/\n\nFiles are set under version control (git), except folders `raw-data/`, `old/`\nand `tmp/`. This can be changed by editing the `.gitignore` file (see\n\u003chttps://git-scm.com/docs/gitignore\u003e).\n\nFurthermore, project-specific file-formatting settings for editors can be set\nusing the `.editorconfig` file (see \u003chttps://editorconfig.org/\u003e).\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fnylander%2Fptemplate","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fnylander%2Fptemplate","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fnylander%2Fptemplate/lists"}