{"id":14063161,"url":"https://github.com/oliviergimenez/reproducible-science","last_synced_at":"2026-02-23T05:15:15.435Z","repository":{"id":83851745,"uuid":"322403427","full_name":"oliviergimenez/reproducible-science","owner":"oliviergimenez","description":"material for teaching reproducible science with R and RStudio","archived":false,"fork":false,"pushed_at":"2021-03-21T11:01:42.000Z","size":24,"stargazers_count":30,"open_issues_count":0,"forks_count":3,"subscribers_count":5,"default_branch":"main","last_synced_at":"2024-12-04T00:32:48.878Z","etag":null,"topics":["git","github","rmarkdown","sf","tidyverse"],"latest_commit_sha":null,"homepage":"","language":null,"has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/oliviergimenez.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null}},"created_at":"2020-12-17T20:18:05.000Z","updated_at":"2024-09-09T19:14:17.000Z","dependencies_parsed_at":"2023-03-27T14:23:43.887Z","dependency_job_id":null,"html_url":"https://github.com/oliviergimenez/reproducible-science","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/oliviergimenez/reproducible-science","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/oliviergimenez%2Freproducible-science","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/oliviergimenez%2Freproducible-science/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/oliviergimenez%2Freproducible-science/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/oliviergimenez%2Freproducible-science/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/oliviergimenez","download_url":"https://codeload.github.com/oliviergimenez/reproducible-science/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/oliviergimenez%2Freproducible-science/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":267703066,"owners_count":24130463,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-07-29T02:00:12.549Z","response_time":2574,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["git","github","rmarkdown","sf","tidyverse"],"created_at":"2024-08-13T07:03:06.158Z","updated_at":"2026-02-23T05:15:15.404Z","avatar_url":"https://github.com/oliviergimenez.png","language":null,"funding_links":[],"categories":["Others"],"sub_categories":[],"readme":"# Reproducible science with R and RStudio\n\nHere you will find the material I use to teach reproducible science with `R` and `RStudio`. This is an old repo, please check [this dedicated website](https://oliviergimenez.github.io/reproducible-science-workshop/) I maintain for a workshop on reproducible science I run for the lab.\n\n* Introduction to `Git` and `GitHub` with `RStudio` [[slides](https://oliviergimenez.github.io/quick-intro-git-github-rstudio/#1)] [[material](https://github.com/oliviergimenez/quick-intro-git-github-rstudio)]\n\n* Writing dynamic and reproducible documents with `R Markdown` [[slides](https://oliviergimenez.github.io/intro_rmarkdown/#1)] [[material](https://github.com/oliviergimenez/intro_rmarkdown)] [[practical](https://github.com/oliviergimenez/intro_rmarkdown_practical)] [[interactive dashboard](https://github.com/oliviergimenez/bias_occupancy)] [[website](https://www.youtube.com/watch?v=4OUEss2XF7E\u0026t=1s)]\n\n* Manipulate and visualise data in the `tidyverse` [[slides](https://oliviergimenez.github.io/intro_tidyverse/#1)] [[material](https://github.com/oliviergimenez/intro_tidyverse)] [[tips](https://oliviergimenez.github.io/tidyverse-tips/)]\n\n* Focus on GIS and spatial data with `sf` package [[slides](https://oliviergimenez.github.io/intro_spatialR/#1)] [[material](https://github.com/oliviergimenez/intro_spatialR)]\n\nTo-do list:\n\n* Write a general introduction to reproducible science; inspiration from this excellent [blog post](https://lgatto.github.io/open-and-rr-2/) and [slides](https://lgatto.github.io/2020_12_04_RSG_online/#1)\n\n* Add practical sessions (like in the R Markdown session; pizza recipe example for GitHub)\n\n* Add something on how to work with Word using [`redoc`](https://bookdown.org/yihui/rmarkdown-cookbook/word-redoc.html)\n\n* Add something on [how to collaborate on Rmd documents](https://bookdown.org/yihui/rmarkdown-cookbook/google-drive.html)\n\n* Check out this excellent [resource](https://psyteachr.github.io/msc-data-skills/)\n     \n* Introduce the concept of research compendium [[paper](https://peerj.com/preprints/3192v1/)] [[`rrtools` package](https://github.com/benmarwick/rrtools)]\n\n* Improve the GitHub course with [this](https://inbo.github.io/git-course/course_rstudio.html), [this](https://ohshitgit.com/) and [that](https://privefl.github.io/R-presentation/rstudio-git.html#1)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Foliviergimenez%2Freproducible-science","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Foliviergimenez%2Freproducible-science","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Foliviergimenez%2Freproducible-science/lists"}