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upload\n================\n\nPlugin for uploading files using the OMERO Command Line Interface (CLI).\n\nRequirements\n------------\n\n* OMERO 5.6.0 or newer\n* Python 3.6 or newer\n\nInstalling from PyPI\n--------------------\n\nThis section assumes that an OMERO.py is already installed.\n\nInstall the command-line tool using `pip \u003chttps://pip.pypa.io/en/stable/\u003e`_::\n\n    $ pip install -U omero-upload\n\nUsage\n-----\n\nThe plugin is called from the command-line using the `omero` command.\n\nTo upload a single file::\n\n    $ omero upload \u003cfile\u003e\n\nThis command will create an `OriginalFile` on the server and return an output\nof type `OriginalFile:\u003cid\u003e`.\n\nTo upload multiple files::\n\n    $ omero upload \u003cfile1\u003e \u003cfile2\u003e\n\nThis command will create two `OriginalFile` and return an output of type `OriginalFile:\u003cid1\u003e,\u003cid2\u003e`\n\nBy default, the mimetype will be guessed from the filename but it can be\nspecified by using the `--mimetype` argument::\n\n    $ omero upload \u003cfile1\u003e --mimetype 'test/csv'\n\nFiles can be in-place uploaded into the OMERO.server via symlinked rather than\nbeing copied. This requires the command to be run on the OMERO.server itself\nfrom a user having write permissions to the OMERO data repository, similarly\nto the [in-place import](https://docs.openmicroscopy.org/omero/latest/sysadmins/in-place-import.html). To run an in-place upload, the `--data-dir` argument must be passed to\nspecify the binary OMERO directory::\n\n    $ omero upload \u003cfile1\u003e --data-dir /OMERO\n\nInstead of creating and returning a simple `OriginalFile` object, it is also possible to wrap the file within a `FileAnnotation` which can then be linked\nto other objects in the database. 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This will also add the ``.dev0`` suffix.\n\nRemember to ``git push`` all commits and tags.\n\nLicense\n-------\n\nThis project, similar to many Open Microscopy Environment (OME) projects, is\nlicensed under the terms of the GNU General Public License (GPL) v2 or later.\n\nCopyright\n---------\n\n2019-2020, The Open Microscopy Environment\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fome%2Fomero-upload","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fome%2Fomero-upload","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fome%2Fomero-upload/lists"}