{"id":20324366,"url":"https://github.com/oniani/covid-19-network","last_synced_at":"2026-03-17T04:44:56.007Z","repository":{"id":37638990,"uuid":"254670727","full_name":"oniani/covid-19-network","owner":"oniani","description":"Code for the Paper \"Constructing Co-occurrence Network Embeddings to Assist Association Extraction for COVID-19 and Other Coronavirus Infectious 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covid-19-network\n\nWe constructed network embeddings for COVID-19 by applying the node2vec model\nover a co-occurrence network derived from the [CORD-19-on-FHIR](https://github.com/fhircat/CORD-19-on-FHIR)\ndataset.\n\nAdditional code can be found at [covid-19-network-embeddings](https://github.com/shenfc/COVID-19-network-embeddings).\n\n## Paper\n\nOur work has been published at [Journal of the American Medical Informatics Association (JAMIA)](https://academic.oup.com/jamia)\nand is available [at this link: https://academic.oup.com/jamia/article/doi/10.1093/jamia/ocaa117/5847598](https://academic.oup.com/jamia/article/doi/10.1093/jamia/ocaa117/5847598).\n\n## Visualization\n\nThe network is visualized using [Bokeh](https://bokeh.org/) and is available\n[here: https://www.davidoniani.com/covid-19-network](https://www.davidoniani.com/covid-19-network).\n\n## Developers\n\n[covid-19-network][covid-19-network] has been developed by [David Oniani][david] and\n[Dr. Feichen Shen][drshen].\n\n## Implementation\n\n[covid-19-network][covid-19-network] has been implemented by [David Oniani][david].\n\n### Collaborators\n\n[Dr. Guoqian Jiang][drgiang] and [Dr. Hongfang Liu][drliu]\n\n## References\n\n- [node2vec](https://github.com/aditya-grover/node2vec)\n- [Link Prediction Experiments](https://github.com/lucashu1/link-prediction)\n\n[david]: https://www.davidoniani.com/\n[drshen]: https://scholar.google.com/citations?user=E3tSCNYAAAAJ\n[drgiang]: https://www.mayo.edu/research/faculty/jiang-guoqian-m-d-ph-d/bio-00093912\n[drliu]: https://www.mayo.edu/research/faculty/jiang-guoqian-m-d-ph-d/bio-00093912\n[covid-19-network]: https://github.com/oniani/covid-19-network\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Foniani%2Fcovid-19-network","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Foniani%2Fcovid-19-network","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Foniani%2Fcovid-19-network/lists"}