{"id":50915353,"url":"https://github.com/open-sci/2021-2022-don-t-lock-up-code","last_synced_at":"2026-06-16T14:02:50.727Z","repository":{"id":44462004,"uuid":"486368166","full_name":"open-sci/2021-2022-don-t-lock-up-code","owner":"open-sci","description":"The repository for the team Don't Lock Up of the Open Science course a.a. 2021/2022","archived":false,"fork":false,"pushed_at":"2023-01-03T23:33:08.000Z","size":225524,"stargazers_count":0,"open_issues_count":0,"forks_count":2,"subscribers_count":1,"default_branch":"main","last_synced_at":"2024-07-30T19:42:03.638Z","etag":null,"topics":["citations","doaj","open-access","open-science","open-source","opencitations"],"latest_commit_sha":null,"homepage":"","language":"Jupyter Notebook","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/open-sci.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE.md","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2022-04-27T22:22:14.000Z","updated_at":"2022-05-23T12:00:16.000Z","dependencies_parsed_at":"2023-02-01T13:46:25.825Z","dependency_job_id":null,"html_url":"https://github.com/open-sci/2021-2022-don-t-lock-up-code","commit_stats":null,"previous_names":[],"tags_count":2,"template":false,"template_full_name":null,"purl":"pkg:github/open-sci/2021-2022-don-t-lock-up-code","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/open-sci%2F2021-2022-don-t-lock-up-code","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/open-sci%2F2021-2022-don-t-lock-up-code/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/open-sci%2F2021-2022-don-t-lock-up-code/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/open-sci%2F2021-2022-don-t-lock-up-code/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/open-sci","download_url":"https://codeload.github.com/open-sci/2021-2022-don-t-lock-up-code/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/open-sci%2F2021-2022-don-t-lock-up-code/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":34408788,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-05-26T15:22:16.424Z","status":"online","status_checked_at":"2026-06-16T02:00:06.860Z","response_time":126,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["citations","doaj","open-access","open-science","open-source","opencitations"],"created_at":"2026-06-16T14:02:49.977Z","updated_at":"2026-06-16T14:02:50.720Z","avatar_url":"https://github.com/open-sci.png","language":"Jupyter Notebook","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Coverage of DOAJ journals' citations through OpenCitations\r\n[![DOI](https://zenodo.org/badge/486368166.svg)](https://zenodo.org/badge/latestdoi/486368166)\r\n\r\nThis is the repository for the software of the research \"Coverage of DOAJ journals' citations through OpenCitations\" made in the context of the Open Science course of 21/22 of University of Bologna held by professor Silvio Peroni.\r\n\r\n## Reproduce Our Experiment\r\n\r\n\r\n### 1. Install\r\n\r\ninstall repo with setup.py tools, launching this command:\r\n\r\n```bash\r\npip install setup.py\r\n```\r\n\r\n### 2. Put input repository inside project\r\n\r\nPut all the files that you need for starting the experiment inside the project root \r\n\r\n### 3. Run configuration\r\n\r\nThen run the command for generating the .env file, storing all the information about the repositories paths\r\n(DOAJ_journals, DOAJ_articles, OpenCitations dump), and starting the Virtual Environment.\r\n\r\n```bash\r\nstart-venv\r\n```\r\n\r\n### 4. Run processing steps\r\n\r\nRun the program launch the _run_ command.\r\n\r\n```bash\r\nrun\r\n```\r\n\r\n**If you want to run a specific command** comment out one or more commands script in the _run.bat_ file. Otherwise\r\nyou can run a specific command from run directory:\r\n\r\n```bash\r\ncd run\r\n```\r\n\r\nand then run the command that you prefer:\r\n\r\n```bash\r\npython -m \u003ccommand\u003e\r\n```\r\n\r\n**WARNING**: running a specific command some errors might occur, due to the fact that sometimes the scripts depends on \r\neach other.\r\n\r\n### 5. Output\r\n\r\nYou can find the output of the running process inside the output repository specified above.\r\n\r\n## Hardware Configurations\r\nOur experiment was made on a machine with this hardware configurations:\r\n* CPU: Intel(R) Core(TM) i7-9750H CPU @ 2.60GHz   2.59 GHz\r\n* RAM: 20,0 GB (19,9 GB usable)\r\n* Storage: 200 GB\r\n\r\n## Source datasets\r\n* [DOAJ public articles data dump](https://doaj.org/public-data-dump/article) (May 01, 2022)\r\n* [DOAJ public journals data dump](https://doaj.org/public-data-dump/journal) (May 07, 2022)\r\n* [OpenCitations COCI dump](https://opencitations.net/download#coci) (March 2022)\r\n\r\n## Other Useful Things\r\n\r\n* [The Data Management Plan](https://doi.org/10.5281/zenodo.6417367)\r\n* [The Protocol](https://dx.doi.org/10.17504/protocols.io.n92ldz598v5b/v5)\r\n* [The Article](https://doi.org/10.5281/zenodo.6574741)\r\n* [The Results](https://doi.org/10.5281/zenodo.6573889)\r\n* [The Sister Research](https://github.com/open-sci/2021-2022-la-chouffe-code)\r\n* [The Presentation](https://doi.org/10.5281/zenodo.6579115)\r\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fopen-sci%2F2021-2022-don-t-lock-up-code","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fopen-sci%2F2021-2022-don-t-lock-up-code","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fopen-sci%2F2021-2022-don-t-lock-up-code/lists"}