{"id":13602364,"url":"https://github.com/opencog/agi-bio","last_synced_at":"2026-03-01T18:33:42.496Z","repository":{"id":25393035,"uuid":"28821661","full_name":"opencog/agi-bio","owner":"opencog","description":"Genomic and Proteomic data exploration and pattern mining","archived":false,"fork":false,"pushed_at":"2025-04-02T21:11:59.000Z","size":156772,"stargazers_count":24,"open_issues_count":0,"forks_count":32,"subscribers_count":23,"default_branch":"master","last_synced_at":"2025-04-02T22:23:09.486Z","etag":null,"topics":["artificial-intelligence","genetic-analysis","genetics","genomics","protein-sequences","proteomics"],"latest_commit_sha":null,"homepage":"","language":"Scheme","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/opencog.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2015-01-05T16:47:12.000Z","updated_at":"2025-04-02T21:12:03.000Z","dependencies_parsed_at":"2022-08-24T04:41:14.221Z","dependency_job_id":null,"html_url":"https://github.com/opencog/agi-bio","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/opencog/agi-bio","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/opencog%2Fagi-bio","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/opencog%2Fagi-bio/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/opencog%2Fagi-bio/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/opencog%2Fagi-bio/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/opencog","download_url":"https://codeload.github.com/opencog/agi-bio/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/opencog%2Fagi-bio/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":29978729,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-03-01T16:35:47.903Z","status":"ssl_error","status_checked_at":"2026-03-01T16:35:44.899Z","response_time":124,"last_error":"SSL_connect returned=1 errno=0 peeraddr=140.82.121.5:443 state=error: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["artificial-intelligence","genetic-analysis","genetics","genomics","protein-sequences","proteomics"],"created_at":"2024-08-01T18:01:21.039Z","updated_at":"2026-03-01T18:33:42.476Z","avatar_url":"https://github.com/opencog.png","language":"Scheme","funding_links":[],"categories":["Scheme","artificial-intelligence"],"sub_categories":[],"readme":"AGI-Bio\n=======\n\nGenomic and proteomic research using the OpenCog toolset.\nThis includes experiments in applying MOSES, PLN, pattern mining\nand other OpenCog components.\n\nThe [**MOZI.AI**](https://github.com/MOZI-AI) repositories make\nuse of this package, and extend the current development of OpenCog-based\nbioinformatics tools as [**SingularityNET**](https://singularitynet.io/)\nsevices.\n\nBuilding and Installing\n=======================\nTo build the AGI-Bio code, you will need to build and install the\n[OpenCog AtomSpace](https://github.com/opencog/atomspace) first.\nAll of the pre-requistes listed there are sufficient to also build\nthis project. Building is as \"usual\":\n```\n    cd to project root dir\n    mkdir build\n    cd build\n    cmake ..\n    make -j\n    sudo make install\n    make -j test\n```\n\nOverview\n========\nThe directory layout is as follows:\n\n* **[bioscience](./bioscience)** - Provides the `GeneNode` and\n  `MoleculeNode` Atom types.\n\n* **[knowledge-import](./knowledge-import)** -- scripts for importing\n   external knowledge bases into the AtomSpace.\n\n* **[moses-scripts](./moses-scripts)** -- scripts for importing MOSES\n  models; such models distinguish binary phenotype categories based\n  on gene expression data.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fopencog%2Fagi-bio","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fopencog%2Fagi-bio","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fopencog%2Fagi-bio/lists"}