{"id":18420651,"url":"https://github.com/openworm/org.geppetto.simulator.external","last_synced_at":"2026-02-27T21:02:33.831Z","repository":{"id":26417887,"uuid":"29868113","full_name":"openworm/org.geppetto.simulator.external","owner":"openworm","description":"Geppetto bundle to add support for external neuronal simulators (NEURON, etc.)","archived":false,"fork":false,"pushed_at":"2022-12-16T04:23:50.000Z","size":53717,"stargazers_count":3,"open_issues_count":8,"forks_count":1,"subscribers_count":21,"default_branch":"master","last_synced_at":"2025-02-16T07:16:37.954Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"http://geppetto.org","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/openworm.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2015-01-26T15:49:45.000Z","updated_at":"2023-07-04T06:41:56.000Z","dependencies_parsed_at":"2022-08-29T05:54:08.393Z","dependency_job_id":null,"html_url":"https://github.com/openworm/org.geppetto.simulator.external","commit_stats":null,"previous_names":[],"tags_count":21,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/openworm%2Forg.geppetto.simulator.external","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/openworm%2Forg.geppetto.simulator.external/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/openworm%2Forg.geppetto.simulator.external/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/openworm%2Forg.geppetto.simulator.external/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/openworm","download_url":"https://codeload.github.com/openworm/org.geppetto.simulator.external/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":248692408,"owners_count":21146565,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-06T04:22:35.719Z","updated_at":"2026-02-27T21:02:28.813Z","avatar_url":"https://github.com/openworm.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"\u003cp align=\"center\"\u003e  \n  \u003cimg src=\"https://github.com/tarelli/bucket/blob/master/geppetto%20logo.png?raw=true\" alt=\"Geppetto logo\"/\u003e\n\u003c/p\u003e\n\norg.geppetto.simulator.external\n======================================\n\nGeppetto Simulator Bundle for External Services\n\n[OpenWorm Project](http://openworm.org)\n\nInstallation\n------------\n\n* Install NEURON (check the [.travis.yml](.travis.yml) for detailed instructions on this and other dependencies)\n* Don't forget to set the NEURON_HOME environment variable to the bin directory.  The final location may be under a directory like x86_64 after build has completed.\n* Install the latest versions of NetPyNE, libNeuroML and pyNeuroML, e.g. `pip install libneuroml --update`.\n* Install jNeuroML (`svn checkout svn://svn.code.sf.net/p/neuroml/code/jNeuroMLJar`) and set JNML_HOME.\n* Fill in paths for your system pointing at the location of NEURON's bin directory and the directory containing jNeuroML's jnml in the [app-config.xml file](https://github.com/openworm/org.geppetto.simulator.external/blob/556c4ee4a1520a50be7fda9b827399c6be2d6faa/src/main/java/META-INF/spring/app-config.xml#L24) (multiple places)\n* Set the [aws.credentials file up correctly](http://docs.geppetto.org/en/latest/persistence.html#setting-up-for-amazon-s3-support)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fopenworm%2Forg.geppetto.simulator.external","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fopenworm%2Forg.geppetto.simulator.external","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fopenworm%2Forg.geppetto.simulator.external/lists"}