{"id":13834696,"url":"https://github.com/orangeSi/biokits","last_synced_at":"2025-07-10T07:30:51.889Z","repository":{"id":201240997,"uuid":"223142609","full_name":"orangeSi/biokits","owner":"orangeSi","description":"bioinformatics tools","archived":false,"fork":false,"pushed_at":"2022-09-21T03:00:26.000Z","size":11712,"stargazers_count":4,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"master","last_synced_at":"2025-05-01T17:31:44.533Z","etag":null,"topics":["bioinformatics","fasta"],"latest_commit_sha":null,"homepage":null,"language":"Crystal","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/orangeSi.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2019-11-21T09:57:24.000Z","updated_at":"2024-03-13T05:34:48.000Z","dependencies_parsed_at":null,"dependency_job_id":"a8ba56b4-aab8-4859-9bb8-2f344462ac82","html_url":"https://github.com/orangeSi/biokits","commit_stats":null,"previous_names":["orangesi/biokits"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/orangeSi/biokits","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/orangeSi%2Fbiokits","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/orangeSi%2Fbiokits/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/orangeSi%2Fbiokits/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/orangeSi%2Fbiokits/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/orangeSi","download_url":"https://codeload.github.com/orangeSi/biokits/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/orangeSi%2Fbiokits/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":264545157,"owners_count":23625403,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioinformatics","fasta"],"created_at":"2024-08-04T14:00:51.152Z","updated_at":"2025-07-10T07:30:50.371Z","avatar_url":"https://github.com/orangeSi.png","language":"Crystal","funding_links":[],"categories":["Github topic - bioinformatics"],"sub_categories":[],"readme":"## biokits\n\n### fxlength: output every sequence length for fasta/fastq format file or stdin\n```\n$cat ref.fa\n\u003ec1\nATCGA\n\u003ec2\nATCG\n\n$zcat ref.fa.gz\n\u003ec1\nATCGA\n\u003ec2\nATCG\n\n$zcat demo.fq.gz\n@fqid1\nATCG\n+\n9999\n@fqid2\nATCGC\n+\n99999\n\n$./fxlength demo.fq.gz\n4\tfqid1\n5\tfqid2\n$./fxlength ref.fa\n5\tc1\n4\tc2\n$./fxlength ref.fa.gz\n5\tc1\n4\tc2\n\n$zcat demo.fq.gz|./fxlength -\n4\tfqid1\n5\tfqid2\n$cat ref.fa|./fxlength -\n5\tc1\n4\tc2\n$zcat ref.fa.gz|./fxlength -\n5\tc1\n4\tc2\n\n\n$ldd fxlength\n\tnot a dynamic executable\n```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2ForangeSi%2Fbiokits","html_url":"https://awesome.ecosyste.ms/projects/github.com%2ForangeSi%2Fbiokits","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2ForangeSi%2Fbiokits/lists"}