{"id":27161071,"url":"https://github.com/outboundbird/bmk_book","last_synced_at":"2025-10-04T17:56:46.057Z","repository":{"id":63245668,"uuid":"539062516","full_name":"outboundbird/bmk_book","owner":"outboundbird","description":"An incomplete learning notes on statistics for biological markers analysis in pharmaceutical context ","archived":false,"fork":false,"pushed_at":"2024-05-23T07:46:28.000Z","size":1365,"stargazers_count":1,"open_issues_count":0,"forks_count":0,"subscribers_count":0,"default_branch":"main","last_synced_at":"2025-06-08T00:47:12.826Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"https://outboundbird.github.io/bmk_book/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/outboundbird.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2022-09-20T15:32:47.000Z","updated_at":"2024-05-23T07:46:33.000Z","dependencies_parsed_at":"2024-05-23T08:47:36.772Z","dependency_job_id":"e65721a8-1475-4c2c-b1a1-d8b6410cad17","html_url":"https://github.com/outboundbird/bmk_book","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/outboundbird/bmk_book","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/outboundbird%2Fbmk_book","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/outboundbird%2Fbmk_book/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/outboundbird%2Fbmk_book/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/outboundbird%2Fbmk_book/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/outboundbird","download_url":"https://codeload.github.com/outboundbird/bmk_book/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/outboundbird%2Fbmk_book/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":278350987,"owners_count":25972676,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-10-04T02:00:05.491Z","response_time":63,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-04-09T00:08:51.485Z","updated_at":"2025-10-04T17:56:46.009Z","avatar_url":"https://github.com/outboundbird.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"# A notebook for biomarker analysis in pharmacutical setting\nAuthor: Siying Huang, PhD Data scientist freelancer, [Resume] (https://awesometomato.shinyapps.io/web_cv/)\n\n## Table of content\n\n### Introduction\n\n### Basic biology\n\n### Cell type analysis\n\n### Gene expression measured by bulk RNA sequencing\n\n### Gene expression measured by nanostring\n\n### Pharmacogenetic analysis\n\n### Multiple comparisons\n\n### Power and sample size calculaiton\n\n### Visualization","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Foutboundbird%2Fbmk_book","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Foutboundbird%2Fbmk_book","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Foutboundbird%2Fbmk_book/lists"}