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R Sandbox\n\nThis is a place to:\n\n- Share R code used by the OFP-SAM team, mainly functions that do not have a\n home in a package (yet).\n\n- Organize and communicate R code development and maintenance by the OFP-SAM\n team.\n\n## OFP-SAM Packages\n\nThe OFP-SAM team maintains, to a varying degree, the following R packages\nrelated to MULTIFAN-CL:\n\nPackage | Maintainer | Created | Last modified | Dependencies | Purpose\n-------------------------------------------------------------------- | ---------- | -------- | ------------- | ----------------------------------------------------------------------------------------------------------------------------------------------- | -----------------------------------------------------------\n[diags4MFCL](https://github.com/PacificCommunity/ofp-sam-diags4MFCL) | Nicholas | 2020 Apr | 2023 Oct | FLR4MFCL, frqit, data.table, ggplot2, ggthemes, magrittr, RColorBrewer | Present MFCL results and diagnostics\n[condor](https://github.com/PacificCommunity/ofp-sam-condor) | Arni | 2023 Feb | 2024 Nov | ssh | Interact with Condor from R via SSH\n[frqit](https://github.com/PacificCommunity/ofp-sam-frqit) | Matt | 2020 May | 2021 Jun | FLR4MFCL | Read and manipulate MFCL frq files\n[FLR4MFCL](https://github.com/PacificCommunity/ofp-sam-flr4mfcl) | Rob | 2015 Mar | 2024 Nov | FLCore | Tame MULTIFAN-CL\n[miWantemLuk](https://github.com/PacificCommunity/mi-wantem-luk) | Rob | 2021 Feb | 2023 Aug | FLR4MFCL, chorddiag, hrbrthemes, networkD3, patchwork, r2d3, tidyverse, viridis | Graphing and data visualisation\n[R4MFCL](https://github.com/PacificCommunity/ofp-sam-r4mfcl) | Arni | 2011 May | 2023 Sep | data.table, dplyr, ggmap, ggplot2, gridExtra, magrittr, mapdata, maps, reshape2, rlang, RODBC, RSQLite, scales, stringr, tidyr, viridis, xtable | Automate the running and analysis of MFCL stock assessments\n\nThis table was last updated on 28 Nov 2024.\n\n## OFP-SAM Shiny apps\n\nFinlay has developed two kinds of Shiny apps to browse OFP-SAM stock\nassessments:\n\n1. **Stepwise** app to plot individual or several models\n2. **Grid** app to plot all grid models\n\nArni adapted the Stepwise app for the YFT 2020 review, based on the SKJ 2022\nStepwise app. Jemery and Arni then adapted the Stepwise app to the BET and YFT\n2023 assessments.\n\nThe following repositories contain OFP-SAM Shiny apps for stock assessments:\n\nPurpose | Repository | Online\n---------------------- | ----------------------------------------------------------------------------------------------- | ------\nDevelopment | https://github.com/PacificCommunity/ofp-sam-shinyMFCL | -\nBET 2020 sensitivities | https://github.com/PacificCommunity/ofp-sam-shinyMFCL/tree/main/examples/bet_2020_sensitivities | -\nBET 2023 stepwise | https://github.com/PacificCommunity/ofp-sam-bet-2023-shiny | -\nSKJ 2022 sensitivities | https://github.com/PacificCommunity/ofp-sam-shinyMFCL/tree/main/examples/skj_2022_reg5_sens | -\nSKJ 2022 stepwise | https://github.com/PacificCommunity/ofp-sam-shinyMFCL/tree/main/examples/skj_2022_stepwise | -\nYFT 2020 review | https://github.com/PacificCommunity/ofp-sam-shinyMFCL/tree/main/examples/yft_2020_review | -\nYFT 2023 stepwise | https://github.com/PacificCommunity/ofp-sam-yft-2023-shiny | -\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fpacificcommunity%2Fofp-sam-r","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fpacificcommunity%2Fofp-sam-r","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fpacificcommunity%2Fofp-sam-r/lists"}