{"id":48609369,"url":"https://github.com/pasmopy/breast_cancer","last_synced_at":"2026-04-09T00:33:28.245Z","repository":{"id":36981698,"uuid":"348209066","full_name":"pasmopy/breast_cancer","owner":"pasmopy","description":"A text-based computational framework for patient -specific modeling for classification of cancers. iScience (2022).","archived":false,"fork":false,"pushed_at":"2024-10-19T16:33:37.000Z","size":316737,"stargazers_count":6,"open_issues_count":0,"forks_count":5,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-09-05T01:37:44.733Z","etag":null,"topics":["breast-cancer","breast-cancer-classification","breast-cancer-prediction","cancer","ccle","digital-twin","in-silico-clinical-trial","patient-specific-modeling","precision-oncology","prognostic-biomarkers","stratification","systems-biology-simulation","tcga"],"latest_commit_sha":null,"homepage":"https://www.cell.com/iscience/fulltext/S2589-0042(22)00214-0","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"apache-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/pasmopy.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":".github/CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2021-03-16T04:05:57.000Z","updated_at":"2024-10-19T16:33:40.000Z","dependencies_parsed_at":"2025-04-13T05:14:35.701Z","dependency_job_id":null,"html_url":"https://github.com/pasmopy/breast_cancer","commit_stats":null,"previous_names":[],"tags_count":2,"template":false,"template_full_name":null,"purl":"pkg:github/pasmopy/breast_cancer","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pasmopy%2Fbreast_cancer","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pasmopy%2Fbreast_cancer/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pasmopy%2Fbreast_cancer/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pasmopy%2Fbreast_cancer/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/pasmopy","download_url":"https://codeload.github.com/pasmopy/breast_cancer/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pasmopy%2Fbreast_cancer/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":31580067,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-04-08T14:31:17.711Z","status":"ssl_error","status_checked_at":"2026-04-08T14:31:17.202Z","response_time":54,"last_error":"SSL_connect returned=1 errno=0 peeraddr=140.82.121.5:443 state=error: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["breast-cancer","breast-cancer-classification","breast-cancer-prediction","cancer","ccle","digital-twin","in-silico-clinical-trial","patient-specific-modeling","precision-oncology","prognostic-biomarkers","stratification","systems-biology-simulation","tcga"],"created_at":"2026-04-09T00:33:28.143Z","updated_at":"2026-04-09T00:33:28.238Z","avatar_url":"https://github.com/pasmopy.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# The Pasmopy Project: Breast Cancer\n\n[![Actions Status](https://github.com/pasmopy/breast_cancer/workflows/Tests/badge.svg)](https://github.com/pasmopy/breast_cancer/actions)\n[![License](https://img.shields.io/badge/License-Apache%202.0-green.svg?logo=apache)](https://opensource.org/licenses/Apache-2.0)\n[![iScience Paper](https://img.shields.io/badge/DOI-10.1016%2Fj.isci.2022.103944-blue)](https://doi.org/10.1016/j.isci.2022.103944)\n\n[![overview](https://raw.githubusercontent.com/pasmopy/pasmopy/master/docs/_static/img/overview.png)](https://pasmopy.readthedocs.io)\n\nThis repository contains modeling and analysis code for the following paper:\n\n- Imoto, H., Yamashiro, S. \u0026 Okada, M. A text-based computational framework for patient -specific modeling for classification of cancers. _iScience_ **25**, 103944 (2022). https://doi.org/10.1016/j.isci.2022.103944\n\n## Installation\n\nClone the package:\n\n```shell\n$ git clone https://github.com/pasmopy/breast_cancer.git\n```\n\n## Getting Started\n\n- Online documentation is hosted on GitHub Pages: https://pasmopy.github.io/breast_cancer.\n\n- Please also refer to the method paper: https://doi.org/10.1016/j.xpro.2022.101619.\n\n## Author\n\n- Hiroaki Imoto\n- Sawa Yamashiro\n\n## License\n\n1. Code license\n\n   Licensed under the [Apache License, Version 2.0](https://www.apache.org/licenses/LICENSE-2.0). For details, see the [LICENSE](LICENSE) file.\n\n2. Model parameters license\n\n   The model parameters are made available under the terms of the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0) license. You can find details at: https://creativecommons.org/licenses/by-nc-nd/4.0\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fpasmopy%2Fbreast_cancer","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fpasmopy%2Fbreast_cancer","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fpasmopy%2Fbreast_cancer/lists"}