{"id":16511371,"url":"https://github.com/pbenner/adaptive-sampling","last_synced_at":"2026-05-06T16:04:30.482Z","repository":{"id":8397491,"uuid":"9976910","full_name":"pbenner/adaptive-sampling","owner":"pbenner","description":"Multibin adaptive sampling 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Installation\n\nFor local installations, say $HOME/.usr, remember to set the following\nenvironment variables:\n\n\texport PATH=\"$HOME/.usr/bin:$PATH\"\n\texport CPATH=$HOME/.usr/include\n\texport LD_LIBRARY_PATH=$HOME/.usr/lib:$LD_LIBRARY_PATH\n\texport LIBRARY_PATH=$LD_LIBRARY_PATH\n\texport MANPATH=$HOME/.usr/share/man:$MANPATH\n\nand then compile with\n\n\t./configure --prefix=$HOME/.usr\n\tmake\n\tmake install\n\n\n## Binning examples\n\n\tbayesian-binning -v -b -m data/binning/data1.cfg\n\tbayesian-binning -m --which=1 data/binning/data1.cfg\n\n\tbayesian-binning -v -b -m data/binning-spikes/data1.cfg\n\n\tbayesian-binning -v -b -m --save=data/binning-spikes/data1.result data/binning-spikes/data1.cfg\n\tbayesian-binning -v -b -m --load=data/binning-spikes/data1.result data/binning-spikes/data1.cfg\n\n\tbayesian-binning -v -b -m -r '(0,0.1)' -s 0.001 --save=data/binning-spikes/data1.result data/binning-spikes/data1.cfg\n\n\tbayesian-binning -v -b --threads=42 G833C11R4_2tone-PSTH_Exci.cfg\n\n\n## Adaptive sampling examples\n\n\tadaptive-sampling -n  10 -m data/sampling/data1.cfg\n\n\tadaptive-sampling -n  10 -m --save=data/sampling/data1.result1 data/sampling/data1.cfg\n\tadaptive-sampling -n  90 -m --load=data/sampling/data1.result1 --save=data/sampling/data1.result2 data/sampling/data1.cfg\n\tadaptive-sampling -n 100 -m --load=data/sampling/data1.result2 --save=data/sampling/data1.result3 data/sampling/data1.cfg\n\n\tadaptive-sampling -m --load=data/sampling/data1.result3 data/sampling/data1.cfg\n\n\tadaptive-sampling -n 100 -m --plot-utility data/sampling/data1.cfg\n\n\tadaptive-sampling -m -n 400 --strategy=uniform --save=data/sampling/data1.result4 data/sampling/data1.cfg\n\n\tadaptive-sampling -n 5 -m --strategy=effective-counts data/sampling/data4.cfg 2\u003e/dev/null\n\tadaptive-sampling -n 5 -m --strategy=kl-divergence data/sampling/data4.cfg 2\u003e/dev/null\n\tadaptive-sampling -n 5 -m --strategy=kl-divergence --kl-multibin data/sampling/data4.cfg 2\u003e/dev/null\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fpbenner%2Fadaptive-sampling","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fpbenner%2Fadaptive-sampling","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fpbenner%2Fadaptive-sampling/lists"}