{"id":16511257,"url":"https://github.com/pbenner/jigwig","last_synced_at":"2025-10-06T23:50:36.051Z","repository":{"id":69897595,"uuid":"87449471","full_name":"pbenner/jigwig","owner":"pbenner","description":"Java BigWig Reader","archived":false,"fork":false,"pushed_at":"2017-06-21T20:03:07.000Z","size":52,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-08-02T02:50:30.834Z","etag":null,"topics":["bigwig","bigwig-files","bioinformatics","java","java-library"],"latest_commit_sha":null,"homepage":"","language":"Java","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/pbenner.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2017-04-06T16:09:46.000Z","updated_at":"2018-07-30T11:39:15.000Z","dependencies_parsed_at":"2023-03-02T10:30:31.322Z","dependency_job_id":null,"html_url":"https://github.com/pbenner/jigwig","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/pbenner/jigwig","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pbenner%2Fjigwig","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pbenner%2Fjigwig/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pbenner%2Fjigwig/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pbenner%2Fjigwig/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/pbenner","download_url":"https://codeload.github.com/pbenner/jigwig/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pbenner%2Fjigwig/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":278698806,"owners_count":26030398,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-10-06T02:00:05.630Z","response_time":65,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bigwig","bigwig-files","bioinformatics","java","java-library"],"created_at":"2024-10-11T15:59:31.800Z","updated_at":"2025-10-06T23:50:36.003Z","avatar_url":"https://github.com/pbenner.png","language":"Java","funding_links":[],"categories":[],"sub_categories":[],"readme":"\nLibrary for reading BigWig files (ported from [Gonetics](https://github.com/pbenner/gonetics)).\n\n## Basic Usage\n\n```java\n  Path path = Paths.get(\"test.bw\");\n  SeekableByteChannel rbc = Files.newByteChannel(path, EnumSet.of(StandardOpenOption.READ));\n  BigWigFile bwf = new BigWigFile(rbc);\n\n  BigWigFileIterator it = bwf.query(\"chr11|chr12\", 112643206, 112658727, 0);\n\n  while (it.hasNext()) {\n    BigWigFileIteratorType r = it.next();\n    BigWigSummaryRecord s = r.getSummary();\n    System.out.printf(\"chrom: %s\\n\", s.getChromName());\n    System.out.printf(\"from : %d\\n\", s.getFrom());\n    System.out.printf(\"to   : %d\\n\", s.getTo());\n    System.out.printf(\"value: %f\\n\", s.getMean());\n    System.out.println();\n  }\n```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fpbenner%2Fjigwig","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fpbenner%2Fjigwig","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fpbenner%2Fjigwig/lists"}