{"id":16511249,"url":"https://github.com/pbenner/modhmm-segmentations","last_synced_at":"2026-03-05T07:02:15.229Z","repository":{"id":69897613,"uuid":"193505819","full_name":"pbenner/modhmm-segmentations","owner":"pbenner","description":"ModHMM Segmentations 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[Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/GRCh38-ascending-aorta/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/GRCh38-ascending-aorta/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/GRCh38-ascending-aorta.json) | total RNA-seq\nGRCh38 gastrocnemius medialis | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/GRCh38-gastrocnemius-medialis/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/GRCh38-gastrocnemius-medialis/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/GRCh38-gastrocnemius-medialis.json) | total RNA-seq\nGRCh38 heart left ventricle | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/GRCh38-heart-left-ventricle/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/GRCh38-heart-left-ventricle/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/GRCh38-heart-left-ventricle.json) | total RNA-seq\nGRCh38 lung upper lobe | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/GRCh38-lung-upper-lobe/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/GRCh38-lung-upper-lobe/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/GRCh38-lung-upper-lobe.json) | total RNA-seq\nGRCh38 pancreas body | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/GRCh38-pancreas-body/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/GRCh38-pancreas-body/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/GRCh38-pancreas-body.json) | total RNA-seq\nGRCh38 spleen | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/GRCh38-spleen/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/GRCh38-spleen/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/GRCh38-spleen.json) | total RNA-seq\nGRCh38 stomach | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/GRCh38-stomach/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/GRCh38-stomach/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/GRCh38-stomach.json) | total RNA-seq\nGRCh38 tibial nerve | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/GRCh38-tibial-nerve/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/GRCh38-tibial-nerve/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/GRCh38-tibial-nerve.json) | total RNA-seq\nGRCh38 transverse colon | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/GRCh38-transverse-colon/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/GRCh38-transverse-colon/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/GRCh38-transverse-colon.json) | total RNA-seq\nGRCh38 uterus | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/GRCh38-uterus/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/GRCh38-uterus/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/GRCh38-uterus.json) | total RNA-seq\nmm10 forebrain embryo day11.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-forebrain-embryo-day11.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-forebrain-embryo-day11.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-forebrain-embryo-day11.5.json) | poly-A RNA-seq\nmm10 forebrain embryo day12.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-forebrain-embryo-day12.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-forebrain-embryo-day12.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-forebrain-embryo-day12.5.json) | poly-A RNA-seq\nmm10 forebrain embryo day13.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-forebrain-embryo-day13.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-forebrain-embryo-day13.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-forebrain-embryo-day13.5.json) | poly-A RNA-seq\nmm10 forebrain embryo day14.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-forebrain-embryo-day14.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-forebrain-embryo-day14.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-forebrain-embryo-day14.5.json) | poly-A RNA-seq\nmm10 forebrain embryo day15.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-forebrain-embryo-day15.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-forebrain-embryo-day15.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-forebrain-embryo-day15.5.json) | poly-A RNA-seq\nmm10 forebrain embryo day16.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-forebrain-embryo-day16.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-forebrain-embryo-day16.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-forebrain-embryo-day16.5.json) | poly-A RNA-seq\nmm10 heart embryo day14.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-heart-embryo-day14.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-heart-embryo-day14.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-heart-embryo-day14.5.json) | poly-A RNA-seq\nmm10 heart embryo day15.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-heart-embryo-day15.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-heart-embryo-day15.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-heart-embryo-day15.5.json) | poly-A RNA-seq\nmm10 hindbrain embryo day11.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-hindbrain-embryo-day11.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-hindbrain-embryo-day11.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-hindbrain-embryo-day11.5.json) | poly-A RNA-seq\nmm10 hindbrain embryo day12.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-hindbrain-embryo-day12.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-hindbrain-embryo-day12.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-hindbrain-embryo-day12.5.json) | poly-A RNA-seq\nmm10 hindbrain embryo day13.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-hindbrain-embryo-day13.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-hindbrain-embryo-day13.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-hindbrain-embryo-day13.5.json) | poly-A RNA-seq\nmm10 hindbrain embryo day14.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-hindbrain-embryo-day14.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-hindbrain-embryo-day14.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-hindbrain-embryo-day14.5.json) | poly-A RNA-seq\nmm10 hindbrain embryo day15.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-hindbrain-embryo-day15.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-hindbrain-embryo-day15.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-hindbrain-embryo-day15.5.json) | poly-A RNA-seq\nmm10 hindbrain embryo day16.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-hindbrain-embryo-day16.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-hindbrain-embryo-day16.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-hindbrain-embryo-day16.5.json) | poly-A RNA-seq\nmm10 kidney embryo day14.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-kidney-embryo-day14.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-kidney-embryo-day14.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-kidney-embryo-day14.5.json) | poly-A RNA-seq\nmm10 kidney embryo day15.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-kidney-embryo-day15.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-kidney-embryo-day15.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-kidney-embryo-day15.5.json) | poly-A RNA-seq\nmm10 kidney embryo day16.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-kidney-embryo-day16.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-kidney-embryo-day16.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-kidney-embryo-day16.5.json) | poly-A RNA-seq\nmm10 limb embryo day14.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-limb-embryo-day14.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-limb-embryo-day14.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-limb-embryo-day14.5.json) | poly-A RNA-seq\nmm10 limb embryo day15.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-limb-embryo-day15.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-limb-embryo-day15.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-limb-embryo-day15.5.json) | poly-A RNA-seq\nmm10 liver embryo day11.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-liver-embryo-day11.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-liver-embryo-day11.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-liver-embryo-day11.5.json) | poly-A RNA-seq\nmm10 liver embryo day12.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-liver-embryo-day12.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-liver-embryo-day12.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-liver-embryo-day12.5.json) | poly-A RNA-seq\nmm10 liver embryo day13.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-liver-embryo-day13.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-liver-embryo-day13.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-liver-embryo-day13.5.json) | poly-A RNA-seq\nmm10 liver embryo day14.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-liver-embryo-day14.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-liver-embryo-day14.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-liver-embryo-day14.5.json) | poly-A RNA-seq\nmm10 liver embryo day15.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-liver-embryo-day15.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-liver-embryo-day15.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-liver-embryo-day15.5.json) | poly-A RNA-seq\nmm10 liver embryo day16.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-liver-embryo-day16.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-liver-embryo-day16.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-liver-embryo-day16.5.json) | poly-A RNA-seq\nmm10 lung embryo day14.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-lung-embryo-day14.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-lung-embryo-day14.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-lung-embryo-day14.5.json) | poly-A RNA-seq\nmm10 lung embryo day15.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-lung-embryo-day15.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-lung-embryo-day15.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-lung-embryo-day15.5.json) | poly-A RNA-seq\nmm10 lung embryo day16.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-lung-embryo-day16.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-lung-embryo-day16.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-lung-embryo-day16.5.json) | poly-A RNA-seq\nmm10 midbrain embryo day11.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-midbrain-embryo-day11.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-midbrain-embryo-day11.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-midbrain-embryo-day11.5.json) | poly-A RNA-seq\nmm10 midbrain embryo day12.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-midbrain-embryo-day12.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-midbrain-embryo-day12.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-midbrain-embryo-day12.5.json) | poly-A RNA-seq\nmm10 midbrain embryo day13.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-midbrain-embryo-day13.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-midbrain-embryo-day13.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-midbrain-embryo-day13.5.json) | poly-A RNA-seq\nmm10 midbrain embryo day14.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-midbrain-embryo-day14.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-midbrain-embryo-day14.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-midbrain-embryo-day14.5.json) | poly-A RNA-seq\nmm10 midbrain embryo day15.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-midbrain-embryo-day15.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-midbrain-embryo-day15.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-midbrain-embryo-day15.5.json) | poly-A RNA-seq\nmm10 midbrain embryo day16.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-midbrain-embryo-day16.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-midbrain-embryo-day16.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-midbrain-embryo-day16.5.json) | poly-A RNA-seq\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fpbenner%2Fmodhmm-segmentations","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fpbenner%2Fmodhmm-segmentations","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fpbenner%2Fmodhmm-segmentations/lists"}