{"id":18538360,"url":"https://github.com/pblischak/evol2017","last_synced_at":"2025-05-15T02:12:02.943Z","repository":{"id":94515782,"uuid":"94897320","full_name":"pblischak/evol2017","owner":"pblischak","description":"Tutorial, code, and data for Evolution 2017","archived":false,"fork":false,"pushed_at":"2017-06-26T18:20:01.000Z","size":1462,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"master","last_synced_at":"2025-02-17T07:44:48.828Z","etag":null,"topics":["hybridization","jupyter-notebook","python27","tutorial"],"latest_commit_sha":null,"homepage":null,"language":"Jupyter Notebook","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/pblischak.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2017-06-20T13:58:44.000Z","updated_at":"2017-06-20T20:02:08.000Z","dependencies_parsed_at":"2023-07-28T07:15:52.601Z","dependency_job_id":null,"html_url":"https://github.com/pblischak/evol2017","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pblischak%2Fevol2017","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pblischak%2Fevol2017/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pblischak%2Fevol2017/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pblischak%2Fevol2017/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/pblischak","download_url":"https://codeload.github.com/pblischak/evol2017/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":254259439,"owners_count":22040821,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["hybridization","jupyter-notebook","python27","tutorial"],"created_at":"2024-11-06T19:43:11.786Z","updated_at":"2025-05-15T02:11:57.931Z","avatar_url":"https://github.com/pblischak.png","language":"Jupyter Notebook","readme":"## Materials for Evolution 2017\n\n\u003e **NB**: Simulating new data sets and analyzing any of the data files requires\n\u003e a few pieces of software. To simulate new data sets using the code provided in the\n\u003e tutorial, you will need [`ms`](http://home.uchicago.edu/rhudson1/source/mksamples.html)\n\u003e and [`Seq-Gen`](http://tree.bio.ed.ac.uk/software/seqgen/). To analyze the data sets and\n\u003e any of the results files you will need to install [**HyDe**](http://hybridization-detection.rtfd.io).\n\n### HyDe Tutorial\n\nThe file `HyDe.ipynb` is a Jupyter Notebook with a walkthrough of the analyses\nthat we conducted as part of our talks at Evolution.\n\n### Data Files\n\n - `data.txt` and `map.txt`: these are simulated data sets that ca be during these\n   the tutorial to test out the different features of HyDe. The code to generate\n   them is in the `HyDe.ipynb` notebook.\n\n - `heliconius-out.txt` and `heliconius-boot.txt`: these are the results files from\n   our analysis of the _Heliconius_ data set from Martin _et al_. (2013).\n\n - `swordtail-out.txt`: this is the result file from our analysis of the swordtail\n   data set from Cui _et al_ (2013).\n","funding_links":[],"categories":[],"sub_categories":[],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fpblischak%2Fevol2017","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fpblischak%2Fevol2017","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fpblischak%2Fevol2017/lists"}