{"id":22621093,"url":"https://github.com/pdimens/2022-tatlanticus_popgen","last_synced_at":"2025-10-18T10:31:32.633Z","repository":{"id":47268720,"uuid":"327038890","full_name":"pdimens/2022-Tatlanticus_popgen","owner":"pdimens","description":"Repository associated with the publication: Weak range-wide population structure in the blackfin tuna (Thunnus atlanticus) revealed by analysis of genome-wide SNPs","archived":false,"fork":false,"pushed_at":"2023-03-01T19:36:46.000Z","size":123071,"stargazers_count":1,"open_issues_count":0,"forks_count":1,"subscribers_count":1,"default_branch":"manuscript","last_synced_at":"2024-12-08T22:17:44.895Z","etag":null,"topics":["population-genetics"],"latest_commit_sha":null,"homepage":"https://doi.org/10.1093/icesjms/fsad012","language":"Jupyter Notebook","has_issues":false,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/pdimens.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2021-01-05T15:23:43.000Z","updated_at":"2023-04-27T18:59:10.000Z","dependencies_parsed_at":"2024-12-08T22:27:49.263Z","dependency_job_id":null,"html_url":"https://github.com/pdimens/2022-Tatlanticus_popgen","commit_stats":{"total_commits":52,"total_committers":1,"mean_commits":52.0,"dds":0.0,"last_synced_commit":"e72d61a9ed3e75b1e5e7d54ecfde9895d9fa78f1"},"previous_names":[],"tags_count":1,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pdimens%2F2022-Tatlanticus_popgen","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pdimens%2F2022-Tatlanticus_popgen/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pdimens%2F2022-Tatlanticus_popgen/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pdimens%2F2022-Tatlanticus_popgen/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/pdimens","download_url":"https://codeload.github.com/pdimens/2022-Tatlanticus_popgen/tar.gz/refs/heads/manuscript","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":236940497,"owners_count":19229153,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["population-genetics"],"created_at":"2024-12-08T22:17:43.613Z","updated_at":"2025-10-18T10:31:29.007Z","avatar_url":"https://github.com/pdimens.png","language":"Jupyter Notebook","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Tatlanticus_popgen\nRepository associated with the publication: Weak range-wide population structure in the blackfin tuna (Thunnus atlanticus) revealed by analysis of genome-wide SNPs found [here](https://doi.org/10.1093/icesjms/fsad012)\n\n## What's included\n- `amova`: Analysis of molecular variance\n- `dapc`: Discriminant Analysis of Principal Components\n- `faststructure`: fastSTRUCTURE analysis\n- `fineradstructure`: fineRADstructure analysis\n- `fst`: Pairwise (Hudson 1992) FST\n- `inputfiles`: All the input files necessary to run any of the notebooks/analyses\n- `isolationbydistance`: Constructing the least-cost paths for isolation-by-distance tests\n- `kinship`: Kinship analysis with KING-robust and PCRelate\n- `outlieranalysis`: Detecting putative outlier loci with BayPass, Bayescan, and outFLANK\n- `pca`: Principal Component Analysis, Principal Coordinate Analysis, and Spatial Principal Component Analysis\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fpdimens%2F2022-tatlanticus_popgen","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fpdimens%2F2022-tatlanticus_popgen","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fpdimens%2F2022-tatlanticus_popgen/lists"}