{"id":49764554,"url":"https://github.com/peyton/braindough","last_synced_at":"2026-05-11T10:20:36.217Z","repository":{"id":356507582,"uuid":"1232710660","full_name":"peyton/braindough","owner":"peyton","description":null,"archived":false,"fork":false,"pushed_at":"2026-05-08T10:26:20.000Z","size":217,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":0,"default_branch":"master","last_synced_at":"2026-05-08T12:28:01.556Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"unlicense","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/peyton.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":"AGENTS.md","dco":null,"cla":null}},"created_at":"2026-05-08T07:34:41.000Z","updated_at":"2026-05-08T10:25:23.000Z","dependencies_parsed_at":null,"dependency_job_id":null,"html_url":"https://github.com/peyton/braindough","commit_stats":null,"previous_names":["peyton/braindough"],"tags_count":null,"template":false,"template_full_name":null,"purl":"pkg:github/peyton/braindough","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/peyton%2Fbraindough","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/peyton%2Fbraindough/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/peyton%2Fbraindough/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/peyton%2Fbraindough/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/peyton","download_url":"https://codeload.github.com/peyton/braindough/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/peyton%2Fbraindough/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":32890326,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-05-10T13:40:02.631Z","status":"online","status_checked_at":"2026-05-11T02:00:05.975Z","response_time":120,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2026-05-11T10:20:35.486Z","updated_at":"2026-05-11T10:20:36.211Z","avatar_url":"https://github.com/peyton.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# braindough\n\n`braindough` is a local-first monorepo for brain-modeling experiments. The\nfirst target is Meta/Facebook TRIBE v2, with deterministic fake-backend runs in\nCI and heavyweight model/cache/run data kept outside the repository.\n\n## Quick Start\n\n```sh\nmise install --locked\njust bootstrap\njust ci\njust run-fake\n```\n\nLocal heavy data defaults to:\n\n```sh\nexport BRAINDOUGH_HOME=\"/Volumes/Virtual Machine HD/Projects/braindough\"\n```\n\nTRIBE v2 runs are opt-in because they may download large model assets and use\nmachine-specific acceleration:\n\n```sh\njust storage-init\njust run-tribe\n```\n\nIf TRIBE v2 cannot run on the current machine, `run-tribe` writes an explicit\nskipped artifact with the blocker instead of failing silently.\n\n## Useful Commands\n\n- `just bootstrap` installs pinned tools, syncs Python deps, and installs hooks.\n- `just check` runs formatting checks, lint, type checking, tests, and artifact\n  validation.\n- `just run-fake` runs the CI-safe deterministic smoke experiment.\n- `just run-tribe` attempts the first local TRIBE v2 suite.\n- `just dataset-bold5000-download` stages BOLD5000 Release 1.0 stimulus-name\n  metadata and processed ROI response archives under external storage.\n- `just run-bold5000-real` runs a bounded real-data BOLD5000 ROI encoding\n  benchmark using Release 1.0 ROI matrices and stimulus metadata. BOLD5000\n  Release 2.0 is author-recommended for new functional analyses and remains\n  future adapter scope.\n- `just run-bold5000-preprint-tr34` and `just run-bold5000-preprint-tr3` run\n  the larger seeded-random BOLD5000 metadata benchmarks used by the preprint\n  workflow.\n- `just run-bold5000-preprint-tr34-grouped-sensitivity` runs a lower-cost\n  grouped-by-filename split sensitivity for repeated-stimulus leakage checks.\n- `just report RUN_DIR=...` rebuilds human-readable reports for an existing run.\n\nSee `docs/` for architecture, storage layout, artifact schema, TRIBE v2 notes,\nand the experiment backlog.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fpeyton%2Fbraindough","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fpeyton%2Fbraindough","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fpeyton%2Fbraindough/lists"}