{"id":21312533,"url":"https://github.com/phydev/spiccato","last_synced_at":"2026-01-03T13:02:51.938Z","repository":{"id":151473226,"uuid":"207192176","full_name":"phydev/SPiCCAto","owner":"phydev","description":"Software developed to study the influence of the extracellular matrix in cell migration.","archived":false,"fork":false,"pushed_at":"2023-08-28T12:57:50.000Z","size":4558,"stargazers_count":4,"open_issues_count":1,"forks_count":1,"subscribers_count":1,"default_branch":"master","last_synced_at":"2025-01-22T10:11:29.631Z","etag":null,"topics":["cell-biology","mathematical-modelling","metastasis","modeling","phase-field"],"latest_commit_sha":null,"homepage":"https://phydev.github.io/SPiCCAto","language":"Fortran","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/phydev.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2019-09-09T00:30:22.000Z","updated_at":"2024-08-22T16:05:33.000Z","dependencies_parsed_at":"2023-05-23T21:15:37.876Z","dependency_job_id":"3eb5d68b-44c1-40e7-8106-512764f30479","html_url":"https://github.com/phydev/SPiCCAto","commit_stats":null,"previous_names":[],"tags_count":1,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/phydev%2FSPiCCAto","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/phydev%2FSPiCCAto/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/phydev%2FSPiCCAto/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/phydev%2FSPiCCAto/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/phydev","download_url":"https://codeload.github.com/phydev/SPiCCAto/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":243790949,"owners_count":20348379,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["cell-biology","mathematical-modelling","metastasis","modeling","phase-field"],"created_at":"2024-11-21T17:34:12.942Z","updated_at":"2026-01-03T13:02:51.862Z","avatar_url":"https://github.com/phydev.png","language":"Fortran","funding_links":[],"categories":[],"sub_categories":[],"readme":"[![Build Status](https://travis-ci.com/phydev/SPiCCAto.svg?branch=master)](https://travis-ci.com/phydev/SPiCCAto)\n[![codecov](https://codecov.io/gh/phydev/SPiCCAto/branch/master/graph/badge.svg?token=RpWeuCwJzu)](https://codecov.io/gh/phydev/SPiCCAto)\n[![License: GPL v3](https://img.shields.io/badge/License-GPLv3-blue.svg)](https://www.gnu.org/licenses/gpl-3.0)\n[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.3534284.svg)](https://doi.org/10.5281/zenodo.3534284)\n\n## Software PaCkage for Cell reseArch\n\nThis project is hosted by the [CFisUC](http://cfisuc.fis.uc.pt/) at the [University of Coimbra](www.uc.pt) \nand consists in a phase-field model for multicellular systems.\n\nThis software was developed to study how the mechanical constraints imposed by the extracellular matrix (ECM) affect cell migration. We explored a phase-field model that describes the fibres and the cell as order parameters that interact by repulsion and adhesion. \n\n\n### Publications\nM. Moreira-Soares, S. Pinto-Cunha, J. R. Bordin, R. D. M. Travasso. *[\"Adhesion modulates cell morphology and migration within dense fibrous networks\"](https://www.biorxiv.org/content/10.1101/838995v1)*.  https://doi.org/10.1101/838995\n\n\n![alt tag](https://raw.githubusercontent.com/phydev/SPiCCAto/master/docs/static_figs/cell_moving.gif)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fphydev%2Fspiccato","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fphydev%2Fspiccato","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fphydev%2Fspiccato/lists"}