{"id":32577179,"url":"https://github.com/pierremasselot/mcc-pmtoxicity","last_synced_at":"2026-07-22T16:32:02.477Z","repository":{"id":260437049,"uuid":"726095684","full_name":"PierreMasselot/MCC-PMtoxicity","owner":"PierreMasselot","description":"A multi-country analysis of differential PM2.5-related mortality risks by pollutant mixture complexity","archived":false,"fork":false,"pushed_at":"2025-02-27T17:33:56.000Z","size":155,"stargazers_count":1,"open_issues_count":0,"forks_count":1,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-02-28T00:59:17.084Z","etag":null,"topics":["air-pollution","analysis","dlm","mcc","meta-analysis","mortality","time-series"],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/PierreMasselot.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2023-12-01T14:26:09.000Z","updated_at":"2025-02-27T17:35:06.000Z","dependencies_parsed_at":"2024-10-31T10:27:41.680Z","dependency_job_id":"8aa39218-87eb-4b14-b7e0-48979ea4e2be","html_url":"https://github.com/PierreMasselot/MCC-PMtoxicity","commit_stats":null,"previous_names":["pierremasselot/mcc-pmtoxicity"],"tags_count":1,"template":false,"template_full_name":null,"purl":"pkg:github/PierreMasselot/MCC-PMtoxicity","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/PierreMasselot%2FMCC-PMtoxicity","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/PierreMasselot%2FMCC-PMtoxicity/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/PierreMasselot%2FMCC-PMtoxicity/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/PierreMasselot%2FMCC-PMtoxicity/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/PierreMasselot","download_url":"https://codeload.github.com/PierreMasselot/MCC-PMtoxicity/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/PierreMasselot%2FMCC-PMtoxicity/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":35769881,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-07-20T02:08:10.276Z","status":"online","status_checked_at":"2026-07-22T02:00:06.236Z","response_time":124,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["air-pollution","analysis","dlm","mcc","meta-analysis","mortality","time-series"],"created_at":"2025-10-29T14:00:30.233Z","updated_at":"2026-07-22T16:32:02.473Z","avatar_url":"https://github.com/PierreMasselot.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"# A multi-country analysis of differential PM2.5-related mortality risks by pollutant mixture complexity\n\nR code and intermediary data performing the analysis from the paper **Air pollution mixture complexity and its effect on PM2.5-related mortality: a multi-country time-series study in 264 cities** published in *Environmental Epidemiology* (https://doi.org/10.1097/EE9.0000000000000342). \n\n## Data\n\nDue to a restrictive data sharing agreement between MCC members on daily mortality and air pollutants, the original data cannot be shared publicly. We instead share city-level aggregated data as well as the log relative risks of PM2.5-related mortality estimated in the first-stage of the analysis. The city-level data can be found in the `data` folder, along with a codebook describing all variables.\n\n## Analysis\n\nThe file `analysis.R` is the master file running the full analysis. It calls functions from the R files in the `scripts` folder. \n\nDue to the restrictions mentioned above, the first-stage of the analysis is not reproducible. Instead, we saved the estimated city-specific log(RR) along with city-specific characteristic and any useful information in the `data` folder. The second-stage of the analysis is thus reproducible using the saved first-stage results. The script `analysis.R` automatically skips the first-stage of the analysis and load the saved results in `data`, unless the use has access to the original data, which would be stored in a `original` folder.\n\nNote that the script used to perform the first stage is available and can therefore be checked and copied by any interested reader of the study.","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fpierremasselot%2Fmcc-pmtoxicity","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fpierremasselot%2Fmcc-pmtoxicity","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fpierremasselot%2Fmcc-pmtoxicity/lists"}