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A limited web implementation is available at: https://crispresso2.pinellolab.org/.\n\nBriefly, CRISPResso2:\n\n- aligns sequencing reads to a reference sequence\n- quantifies insertions, mutations and deletions to determine whether a read is modified or unmodified by genome editing\n- summarizes editing results in intuitive plots and datasets\n\nAccess the full documentation at \u003chttps://docs.crispresso.com\u003e.\n\nIn addition, CRISPResso can be run as part of a larger tool suite:\n\n- [CRISPRessoBatch](https://docs.crispresso.com/suite/batch/tool.html) - for analyzing and comparing multiple experimental conditions at the same site\n- [CRISPRessoPooled](https://docs.crispresso.com/suite/pooled/tool.html) - for analyzing multiple amplicons from a pooled amplicon sequencing experiment\n- [CRISPRessoWGS](https://docs.crispresso.com/suite/wgs/tool.html) - for analyzing specific sites in whole-genome sequencing samples\n- [CRISPRessoCompare](https://docs.crispresso.com/suite/compare/tool.html) - for comparing editing between two samples (e.g., treated vs control)\n- [CRISPRessoAggregate](https://docs.crispresso.com/suite/aggregate/tool.html) - for aggregating results from previously-run CRISPResso analyses\n\n![CRISPResso2 Schematic](https://raw.githubusercontent.com/pinellolab/CRISPResso2/master/crispresso_schematic.png \"CRISPResso2 Schematic\")\n\n## Installation\n\nCRISPResso2 can be [installed](https://docs.crispresso.com/installation.html) in the following ways:\n\n- [Bioconda](https://docs.crispresso.com/installation.html#bioconda)\n  - [Bioconda on Apple Silicon](https://docs.crispresso.com/installation.html#bioconda-for-apple-silicon)\n- [Docker](https://docs.crispresso.com/installation.html#docker)\n\n## Examples\n\n- [CRISPResso example runs](https://docs.crispresso.com/suite/core/examples.html)\n- [CRISPRessoBatch example runs](https://docs.crispresso.com/suite/batch/examples.html)\n- [CRISPRessoPooled example runs](https://docs.crispresso.com/suite/pooled/examples.html)\n- [CRISPRessoWGS example runs](https://docs.crispresso.com/suite/wgs/examples.html)\n- [CRISPRessoCompare example runs](https://docs.crispresso.com/suite/compare/examples.html)\n- [CRISPRessoPooledWGCompare example runs](https://docs.crispresso.com/suite/pooledwgscompare/examples.html)\n- [CRISPRessoAggregate example runs](https://docs.crispresso.com/suite/aggregate/examples.html)\n\n## Troubleshooting\n\nIf you run into any issues, check out the [Troubleshooting page](https://docs.crispresso.com/troubleshooting.html) or submit a [new discussion](https://github.com/pinellolab/CRISPResso2/discussions/new?category=troubleshooting).\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fpinellolab%2Fcrispresso2","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fpinellolab%2Fcrispresso2","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fpinellolab%2Fcrispresso2/lists"}