{"id":35188277,"url":"https://github.com/poisotlab/omnomnomivores","last_synced_at":"2026-04-06T00:02:07.367Z","repository":{"id":146469500,"uuid":"610227348","full_name":"PoisotLab/Omnomnomivores","owner":"PoisotLab","description":"Sadly no omnomnomivores will be featured 😔 ","archived":false,"fork":false,"pushed_at":"2024-07-05T08:02:43.000Z","size":13341,"stargazers_count":0,"open_issues_count":6,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-12-31T21:57:26.663Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Julia","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/PoisotLab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null}},"created_at":"2023-03-06T10:57:39.000Z","updated_at":"2024-07-05T08:02:47.000Z","dependencies_parsed_at":"2024-02-29T07:27:44.572Z","dependency_job_id":"bf6138b0-cbf4-445a-b2bb-44398ff60330","html_url":"https://github.com/PoisotLab/Omnomnomivores","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/PoisotLab/Omnomnomivores","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/PoisotLab%2FOmnomnomivores","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/PoisotLab%2FOmnomnomivores/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/PoisotLab%2FOmnomnomivores/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/PoisotLab%2FOmnomnomivores/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/PoisotLab","download_url":"https://codeload.github.com/PoisotLab/Omnomnomivores/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/PoisotLab%2FOmnomnomivores/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":31454200,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-04-05T21:22:52.476Z","status":"ssl_error","status_checked_at":"2026-04-05T21:22:51.943Z","response_time":75,"last_error":"SSL_connect returned=1 errno=0 peeraddr=140.82.121.6:443 state=error: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-12-29T05:21:40.486Z","updated_at":"2026-04-06T00:02:07.354Z","avatar_url":"https://github.com/PoisotLab.png","language":"Julia","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Omnomnomivores\n\n\u003cp style=\"text-align: center;\"\u003e\"Never become desperate enough to trust the untrustworthy.\" ―Moral\u003c/p\u003e\n\nThe code associated with this repository is essentially taking the metacommunity\nmodel from [Thompson and Gonzalez\n2017](https://doi.org/10.1038/s41559-017-0162) and adding some modification\nto the workflow to suit the specific research goals/questions. A high-level\nvisual summary of the model itself can be found below:\n\n![](figures/Boundaries_model.png)\n\nAs for the research aims the idea is to use wombling to look at the rates of\nchange of networks/communities over varying degrees of landscape connectivity\nand environmental effect. Essentially delivering us with a figure that looks\nlike this:\n\n![](figures/heatmaps.png)\n\n## REPO STRUCTURE\n\nCode associated with the internal functioning of the metacommunity model can be found in \n`lib/`.\n\n`01_full_simulation.jl` is where the process of generating the metacommunites can be found.\nThis includes a 'proofing' (burnin), baking (heating phase where landscape and environmental \nvalues are gradually changed), and cooling (where the final 'state' is kept steady to allow \ncommunity dynamic to 'settle')\n\n`02_wombling.jl` takes the outputs from the metacomunity simulations and implements the\nrelevant wombling related questions.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fpoisotlab%2Fomnomnomivores","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fpoisotlab%2Fomnomnomivores","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fpoisotlab%2Fomnomnomivores/lists"}