{"id":18826146,"url":"https://github.com/pwwang/scplotter","last_synced_at":"2025-04-05T12:03:49.644Z","repository":{"id":258071148,"uuid":"851918179","full_name":"pwwang/scplotter","owner":"pwwang","description":"scplotter is an R package that is built upon plotthis. 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It provides a set of functions to visualize single-cell sequencing data in an easy and efficient way.\n\n## Installation\n\n```r\nremotes::install_github(\"pwwang/scplotter\")\n# or\ndevtools::install_github(\"pwwang/scplotter\")\n# or using conda\n$ conda install pwwang::r-scplotter\n```\n\n## Credits\n\n`scplotter` draws significant inspiration from the [`SCP`][2] package, which separates visualization from analysis and implements it in the [`plotthis`][1] package. Building on `plotthis`, `scplotter` offers advanced functions for visualizing single-cell sequencing data. Special thanks to the [`scRepertoire`][21] package for its APIs that facilitate the analysis of single-cell TCR/BCR sequencing data.\n\n## Gallery\n\n### scRNA-seq\n\n[`CellDimPlot`][3]\n\n![](./man/figures/celldimplot.png)\n\n[`CellStatPlot`][4]\n\n![](./man/figures/cellstatplot.png)\n\n[`ClustreePlot`][5]\n\n![](./man/figures/clustreeplot.png)\n\n[`FeatureStatPlot`][6]\n\n![](./man/figures/featurestatplot.png)\n\n[`EnrichmentPlot`][7]\n\n![](./man/figures/enrichmentplot.png)\n\n[`GSEASummaryPlot`][8] | [`GSEAPlot`][8]\n\n![](./man/figures/gseaplot.png)\n\n[`VolcanoPlot`][9]\n\n![](./man/figures/volcanoplot.png)\n\n[`CCCPlot`][10] (Cell-Cell Communication Plot)\n\n![](./man/figures/cccplot.png)\n\n### scTCR-seq/scBCR-seq\n\n[`ClonalVolumePlot`][11] | [`ClonalAbundancePlot`][12] | [`ClonalResidencyPlot`][13] | [`ClonalDynamicsPlot`][22] | [`ClonalCompositionPlot`][14] | [`ClonalOverlapPlot`][15] | [`ClonalGeneUsagePlot`][16]\n\n![](./man/figures/clonalstat.png)\n\n[`ClonalRarefactionPlot`][17] | [`ClonalGeneUsagePlot`][18] | [`ClonalDiversityPlot`][19] | [`ClonalPositionalPlot`][20]\n\n![](./man/figures/clonaldiv.png)\n\n[1]: https://github.com/pwwang/plotthis\n[2]: https://zhanghao-njmu.github.io/SCP/index.html\n[3]: https://pwwang.github.io/scplotter/reference/CellDimPlot.html\n[4]: https://pwwang.github.io/scplotter/reference/CellStatPlot.html\n[5]: https://pwwang.github.io/scplotter/reference/ClustreePlot.html\n[6]: https://pwwang.github.io/scplotter/reference/FeatureStatPlot.html\n[7]: https://pwwang.github.io/scplotter/reference/EnrichmentPlot.html\n[8]: https://pwwang.github.io/plotthis/reference/gsea.html\n[9]: https://pwwang.github.io/plotthis/reference/VolcanoPlot.html\n[10]: https://pwwang.github.io/scplotter/reference/CCCPlot.html\n[11]: https://pwwang.github.io/scplotter/reference/ClonalVolumePlot.html\n[12]: https://pwwang.github.io/scplotter/reference/ClonalAbundancePlot.html\n[13]: https://pwwang.github.io/scplotter/reference/ClonalResidencyPlot.html\n[14]: https://pwwang.github.io/scplotter/reference/ClonalCompositionPlot.html\n[15]: https://pwwang.github.io/scplotter/reference/ClonalOverlapPlot.html\n[16]: https://pwwang.github.io/scplotter/reference/ClonalGeneUsagePlot.html\n[17]: https://pwwang.github.io/scplotter/reference/ClonalRarefactionPlot.html\n[18]: https://pwwang.github.io/scplotter/reference/ClonalGeneUsagePlot.html\n[19]: https://pwwang.github.io/scplotter/reference/ClonalDiversityPlot.html\n[20]: https://pwwang.github.io/scplotter/reference/ClonalPositionalPlot.html\n[21]: https://github.com/ncborcherding/scRepertoire\n[22]: https://pwwang.github.io/scplotter/reference/ClonalDynamicsPlot.html\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fpwwang%2Fscplotter","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fpwwang%2Fscplotter","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fpwwang%2Fscplotter/lists"}