{"id":49324771,"url":"https://github.com/qbicsoftware/agent-skills","last_synced_at":"2026-04-26T19:30:53.609Z","repository":{"id":338807485,"uuid":"1159147466","full_name":"qbicsoftware/agent-skills","owner":"qbicsoftware","description":"A collection of self-made skills for autonomous agents and a reference for useful third-party 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unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2026-04-26T19:30:51.286Z","updated_at":"2026-04-26T19:30:53.599Z","avatar_url":"https://github.com/qbicsoftware.png","language":null,"funding_links":[],"categories":[],"sub_categories":[],"readme":"# QBiC × BDS Agent Skills Collection (University of Tübingen)\n\nThis repository is a curated collection of **self-made,\n[Agent Skills](https://agentskills.io)--compliant skills** developed at the University of\nTübingen as a joint effort of the **Quantitative Biology Center (QBiC)**\nand the **Chair for Biomedical Data Science (BDS)**.\n\nThe primary purpose of this repository is to provide reusable, versioned\nskills that can be embedded into other Git projects (e.g., agent\nprojects, automation repositories, internal tooling) while keeping\nvalidation and maintenance centralized.\n\n------------------------------------------------------------------------\n\n## Scope\n\n-   A collection of skills stored under `./skills/`\n-   Skills intended to be fully **agentskills.io compliant**\n-   Continuous validation via GitHub CI using `sklint` in strict mode\n-   Optional agent governance via `AGENTS.md` (see section below)\n\nThis repository is a **skills library**, not a full agent project.\n\n------------------------------------------------------------------------\n\n## Repository Structure\n\n    .\n    ├── skills/\n    │   ├── \u003cskill-name\u003e/\n    │   │   ├── SKILL.md\n    │   │   └── ...\n    ├── .github/workflows/\n    ├── AGENTS.md\n    └── README.md\n\n------------------------------------------------------------------------\n\n## Validation (CI)\n\nThis repository runs [`sklint`](https://github.com/sven1103-agent/sklint) in CI to ensure all skills conform to the [Agent Skills](https://agentskills.io) specification. `sklint` is a Go CLI purpose-built for this — it is **preferred over the reference implementation** (`skills-ref`) bundled with the agentskills.io repository, which is intended for demonstration purposes only and is not suitable for production CI use.\n\nTypical CI logic:\n\n-   Iterate over directories in `skills/*`\n-   Run `sklint --strict \u003cskill-dir\u003e`\n\nFor installation instructions and full usage documentation, refer to the [`sklint` repository](https://github.com/sven1103-agent/sklint).\n\n\n------------------------------------------------------------------------\n\n## Recommended Integration into Other Git Projects\n\n### Option A: Git Submodule (Recommended)\n\n    git submodule add https://github.com/qbicsoftware/agent-skills vendor/tue-skills\n    git submodule update --init --recursive\n\nReference skills from:\n\n    vendor/tue-skills/skills/\u003cskill-name\u003e\n\nUpdate later:\n\n    git submodule update --remote --merge\n\n------------------------------------------------------------------------\n\n### Option B: Git Subtree\n\n    git subtree add --prefix vendor/tue-skills https://github.com/qbicsoftware/agent-skills main --squash\n\nUpdate:\n\n    git subtree pull --prefix vendor/tue-skills https://github.com/qbicsoftware/agent-skills main --squash\n\n------------------------------------------------------------------------\n\n### Option C: Manual Clone\n\n    git clone https://github.com/qbicsoftware/agent-skills\n\nCopy or sync the `skills/` directory as needed.\n\n------------------------------------------------------------------------\n\n## Using the Skills\n\nDepending on your tooling, you may:\n\n-   Point your agent tooling to the `skills/` directory\n-   Symlink selected skills into a local skills folder\n\nExample:\n\n    mkdir -p .agents/skills\n    ln -s ../../vendor/tue-skills/skills/\u003cskill-name\u003e .agents/skills/\u003cskill-name\u003e\n\n------------------------------------------------------------------------\n\n## About `AGENTS.md` and How to Disable It\n\nThis repository contains an `AGENTS.md` to guide agents working **inside\nthis repository**.\n\nWhen vendoring this repo (submodule/subtree), you may not want these\ninstructions to apply to your project.\n\n### Options to Avoid Inheriting AGENTS.md\n\n1.  Run agents from your project root (your own `AGENTS.md` takes\n    precedence).\n2.  Place the submodule in a directory like `vendor/` or `third_party/`\n    and exclude it from agent scanning.\n3.  Override with your own root-level `AGENTS.md`.\n4.  If supported by your tooling, explicitly disable agent instruction\n    scanning for the vendored path.\n\n------------------------------------------------------------------------\n\n## Contributing\n\n-   Add new skills under `skills/\u003cskill-name\u003e/`\n-   Ensure [Agent Skills](https://agentskills.io) compliance\n-   Run `sklint --strict` locally\n-   CI must pass before merging\n\n------------------------------------------------------------------------\n\n## Maintainers\n\nMaintained as a joint effort of:\n\n-   Quantitative Biology Center (QBiC), University of Tübingen\n-   Chair for Biomedical Data Science (BDS), University of Tübingen\n\n------------------------------------------------------------------------\n\n## Skills\n\n### `linear-thinking`\n\n#### Description\nEnforce clear, step-by-step, cause→effect reasoning and a single ordered plan. Use for tasks that benefit from structured analysis (requirements, debugging, implementation planning, checklists).\n\n#### License\nAGPL-3.0-only\n\n#### Metadata\n- author: `Sven Fillinger`\n- version: `1.0`\n\n### `build-skill`\n\n#### Description\nGuide for building valid Agent Skills. Use when creating new skills, validating existing ones, or when you need to understand the agentskills specification structure.\n\n#### License\nAGPL-3.0-only\n\n#### Metadata\n- author: `agent-skills`\n- version: `1.0`\n\n## License\n\nThis repository is lincensed under the [AGPL-3.0 license](https://github.com/qbicsoftware/agent-skills?tab=AGPL-3.0-1-ov-file#)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fqbicsoftware%2Fagent-skills","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fqbicsoftware%2Fagent-skills","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fqbicsoftware%2Fagent-skills/lists"}