{"id":21054489,"url":"https://github.com/qpcr4vir/visualolideg","last_synced_at":"2026-03-16T20:02:41.818Z","repository":{"id":83765130,"uuid":"41682970","full_name":"qPCR4vir/VisualOliDeg","owner":"qPCR4vir","description":"design of primers and probes for PCR/microarray by visual selection from aligned DNA sequences","archived":false,"fork":false,"pushed_at":"2016-12-16T16:50:15.000Z","size":923,"stargazers_count":2,"open_issues_count":8,"forks_count":0,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-02-25T12:55:38.806Z","etag":null,"topics":["aligned-dna-sequences","bioinformatics","excel","microarray","pcr","primer","science","workbook"],"latest_commit_sha":null,"homepage":"","language":"Visual Basic","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/qPCR4vir.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2015-08-31T15:18:02.000Z","updated_at":"2025-02-25T11:40:36.000Z","dependencies_parsed_at":"2023-09-21T17:01:07.857Z","dependency_job_id":null,"html_url":"https://github.com/qPCR4vir/VisualOliDeg","commit_stats":{"total_commits":43,"total_committers":1,"mean_commits":43.0,"dds":0.0,"last_synced_commit":"e51514915953e32c4ce71ea5c9460d3a978dd6c3"},"previous_names":[],"tags_count":5,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/qPCR4vir%2FVisualOliDeg","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/qPCR4vir%2FVisualOliDeg/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/qPCR4vir%2FVisualOliDeg/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/qPCR4vir%2FVisualOliDeg/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/qPCR4vir","download_url":"https://codeload.github.com/qPCR4vir/VisualOliDeg/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":243500771,"owners_count":20300770,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["aligned-dna-sequences","bioinformatics","excel","microarray","pcr","primer","science","workbook"],"created_at":"2024-11-19T16:14:19.999Z","updated_at":"2025-12-28T20:22:41.226Z","avatar_url":"https://github.com/qPCR4vir.png","language":"Visual Basic","funding_links":[],"categories":[],"sub_categories":[],"readme":"## Please donwload the latest version from the Release tab https://github.com/qPCR4vir/VisualOliDeg/releases\n\nRead [our Wiki](https://github.com/qPCR4vir/VisualOliDeg/wiki).\n# Visual OligoDeg\nVisual OligoDeg: design of candidate primers and probes for PCR and microarray by visual selection from aligned DNA sequences.\n\nThe workbook VisualOligoDeg facilitates visualization and selection of oligonucleotides hybridizing to all the sequences in a multi-alignment, or to most of the sequences of a given group. \nIt is used for the design of PCR and low-density microarrays.\n\nExcel workbooks are treated as binary files by git (and GitHub) and thus most of the versioning possibilities \nfor source code are not available. In this repository the VBA code is saved as text to access these posibilities \nand are exported or imported from the workbook as needed. This can lead to inconsistencies - that is why it is \nbest to simply donwload the workbook from the Release tab.\n\nProblems? Suggestions?\t\tOpen an \"Issue\" at https://github.com/qPCR4vir/VisualOliDeg/issues/new\n\t\tor directly write to the author. For more information [visit our wiki](https://github.com/qPCR4vir/VisualOliDeg/wiki). \n\n\nIf you use it, please cite:\nAriel Vina-Rodriguez, Martin Eiden and Martin H. Groschup. 2017. \"**_VisualOligoDeg_: visual selection of PCR and microarray primers and probes from aligned sequences.**\". In press. \n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fqpcr4vir%2Fvisualolideg","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fqpcr4vir%2Fvisualolideg","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fqpcr4vir%2Fvisualolideg/lists"}