{"id":19998787,"url":"https://github.com/quantixed/mitotictiming","last_synced_at":"2026-02-13T11:11:42.006Z","repository":{"id":100276001,"uuid":"372754236","full_name":"quantixed/MitoticTiming","owner":"quantixed","description":"Visualising mitotic timing and progression of mitosis","archived":false,"fork":false,"pushed_at":"2021-10-22T15:50:44.000Z","size":582,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":3,"default_branch":"main","last_synced_at":"2025-08-01T15:46:58.997Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"IGOR Pro","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/quantixed.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2021-06-01T08:20:26.000Z","updated_at":"2021-10-22T15:50:48.000Z","dependencies_parsed_at":"2023-05-13T09:45:42.886Z","dependency_job_id":null,"html_url":"https://github.com/quantixed/MitoticTiming","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/quantixed/MitoticTiming","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/quantixed%2FMitoticTiming","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/quantixed%2FMitoticTiming/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/quantixed%2FMitoticTiming/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/quantixed%2FMitoticTiming/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/quantixed","download_url":"https://codeload.github.com/quantixed/MitoticTiming/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/quantixed%2FMitoticTiming/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273061066,"owners_count":25038596,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-31T02:00:09.071Z","response_time":79,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-13T05:09:29.365Z","updated_at":"2026-02-13T11:11:41.955Z","avatar_url":"https://github.com/quantixed.png","language":"IGOR Pro","readme":"# MitoticTiming\n\nCode to visualise mitotic timing and progression of mitosis using IGOR Pro.\n\nSummary statistics including cumulative histograms and stick graphs are plotted from data acquired by the user.\n\nAn example file is included in the repo to try.\nA typical output is shown below.\n\n![summary](img/summaryLayout.png)\n\nIn addition, the following summary is printed:\n\n```\nfoo_NM progression: 106 for 106 cells.T-half: 17.357\nbar_NM progression: 90 for 90 cells.T-half: 19.7\nfoo_MA progression: 106 for 106 cells.T-half: 25.8\nbar_MA progression: 90 for 90 cells.T-half: 39.5\nfoo_NA progression: 106 for 106 cells.T-half: 42.375\nbar_NA progression: 90 for 90 cells.T-half: 60\n```\n\n## Workflow\n\nUser gathers data in an Excel workbook.\nEach worksheet is a separate condition (label it appropriately)\nThree columns labelled NEB, Meta, Ana\nEach row is a cell's timeline, user inputs the frame numbers for transitions.\n\nSelect _Macros \u003e Miotic Timing..._ in Igor after loading `MitoticTiming.ipf`\n\n![panel](img/panel.png)\n\nUsing this panel, the user specifies the Excel workbook by clicking _File_.\n\n- The time interval of the experiments can be specified (default is 3 min, if your data is in minutes and not frame numbers, specify 1 here).\n- Uncheck the box to remove the cells that do not divide from summary statistics.\n- The stick graph can be ordered according to the duration of three different intervals depending on user preference.\n\n## Notes\n\n- `MitoticTiming.ipf` is written for IGOR Pro 9 but it will compile and run on IGOR Pro 8.\n- Use NA, NAN or blank to denote cells that didn't transition. Don't use 0.\n- It is possible to generate a series of PDF reports from a directory of xlsx workbooks, see _Macros_ menu.\n\n","funding_links":[],"categories":[],"sub_categories":[],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fquantixed%2Fmitotictiming","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fquantixed%2Fmitotictiming","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fquantixed%2Fmitotictiming/lists"}