{"id":13791436,"url":"https://github.com/quarto-journals/biophysical-journal","last_synced_at":"2025-05-12T14:30:38.728Z","repository":{"id":44449273,"uuid":"507609918","full_name":"quarto-journals/biophysical-journal","owner":"quarto-journals","description":"Quarto template for Biophysical journal","archived":false,"fork":false,"pushed_at":"2023-06-29T14:26:37.000Z","size":4430,"stargazers_count":5,"open_issues_count":0,"forks_count":2,"subscribers_count":2,"default_branch":"main","last_synced_at":"2025-05-10T07:43:50.647Z","etag":null,"topics":["quarto","quarto-extension","quarto-template"],"latest_commit_sha":null,"homepage":"https://quarto-journals.github.io/biophysical-journal/","language":"TeX","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/quarto-journals.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null}},"created_at":"2022-06-26T15:20:32.000Z","updated_at":"2025-02-12T22:09:11.000Z","dependencies_parsed_at":"2024-01-05T23:53:41.750Z","dependency_job_id":"87633385-6b0b-4b34-b479-5a2d56390ed9","html_url":"https://github.com/quarto-journals/biophysical-journal","commit_stats":null,"previous_names":[],"tags_count":1,"template":false,"template_full_name":"quarto-journals/article-format-template","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/quarto-journals%2Fbiophysical-journal","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/quarto-journals%2Fbiophysical-journal/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/quarto-journals%2Fbiophysical-journal/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/quarto-journals%2Fbiophysical-journal/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/quarto-journals","download_url":"https://codeload.github.com/quarto-journals/biophysical-journal/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":253754959,"owners_count":21958933,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["quarto","quarto-extension","quarto-template"],"created_at":"2024-08-03T22:01:00.199Z","updated_at":"2025-05-12T14:30:37.932Z","avatar_url":"https://github.com/quarto-journals.png","language":"TeX","funding_links":[],"categories":["Templates"],"sub_categories":["Journals"],"readme":"# Biophysical Journal (BJ)\n\nThis Quarto format will help you create documents for the Biophysical Journal. To learn more about biophysical journal, see [biophysj's Information for Authors page](https://www.cell.com/biophysj/author-resources). For more about Quarto and how to use format extensions, see \u003chttps://quarto.org/docs/journals/\u003e.\n\n\nThis is based on the BJ Overleaf template \u003chttps://www.overleaf.com/articles/biophysical%E2%80%90journaltemplate/pxxcptphxdhv\u003e\n\nThe LaTeX `.cls` was only changed in one place, to remove math packages as those are already handled by quarto/pandoc.\n\n## Creating a New Article\n\nYou can use this as a template to create an article for the Biophysical Journal. To do this, use the following command:\n\n```quarto use template quarto-journals/biophysical-journal```\n\nThis will install the extension and create an example qmd file and bibiography that you can use as a starting place for your article.\n\n## Installation For Existing Document\n\nYou may also use this format with an existing Quarto project or document. From the quarto project or document directory, run the following command to install this format:\n\n```quarto add quarto-journals/biophysical-journal```\n\n## Usage \n\nTo use the format, you can use the format names `bj-pdf` and `bj-html`. For example:\n\n```quarto render article.qmd --to bj-pdf```\n\nor in your document yaml\n\n```yaml\nformat:\n  pdf: default\n  bj-pdf:\n    keep-tex: true    \n```\n\nYou can view a preview of the rendered template at \u003chttps://quarto-journals.github.io/biophysical-journal/\u003e.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fquarto-journals%2Fbiophysical-journal","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fquarto-journals%2Fbiophysical-journal","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fquarto-journals%2Fbiophysical-journal/lists"}