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Domain-Specific Applications","Libraries, Tools and Projects"],"sub_categories":["🧬 Biology \u0026 Medicine"],"readme":"[![Image.sc forum](https://img.shields.io/badge/dynamic/json.svg?label=forum\u0026url=https%3A%2F%2Fforum.image.sc%2Ftags%2Fqupath.json\u0026query=%24.topic_list.tags.0.topic_count\u0026colorB=brightgreen\u0026suffix=%20topics\u0026logo=data:image/png;base64,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)](https://forum.image.sc/tag/qupath)\n[![Total downloads](https://img.shields.io/github/downloads/qupath/qupath/total?style=flat)](https://github.com/qupath/qupath/releases)\n[![Latest release downloads](https://img.shields.io/github/downloads/qupath/qupath/latest/total?style=flat)](https://github.com/qupath/qupath/releases/latest)\n[![Paper](https://zenodo.org/badge/DOI/10.1038/s41598-017-17204-5.svg)](https://doi.org/10.1038/s41598-017-17204-5)\n[![Twitter](https://img.shields.io/twitter/follow/qupath?style=flat)](http://twitter.com/qupath)\n\n# QuPath\n\n**QuPath is open source software for bioimage analysis**.\n\nFeatures include:\n\n* Lots of tools to annotate and view images, including whole slide \u0026 microscopy images\n* Workflows for brightfield \u0026 fluorescence image analysis\n* New algorithms for common tasks, including cell segmentation, tissue microarray dearraying\n* Interactive machine learning for object \u0026 pixel classification\n* Customization, batch-processing \u0026 data interrogation by scripting\n* Easy integration with other tools, including ImageJ\n\nTo **download QuPath**, go to the [Latest Releases](https://github.com/qupath/qupath/releases/latest) page.\n\nFor **documentation**, see [https://qupath.readthedocs.io](https://qupath.readthedocs.io)\n\nFor **help \u0026 support**, try [image.sc](https://forum.image.sc/tag/qupath) or the [links here](https://qupath.readthedocs.io/en/latest/docs/starting/help.html)\n\nTo **build QuPath from source** see [here](https://qupath.readthedocs.io/en/latest/docs/reference/building.html).\n\n**If you find QuPath useful in work that you publish, please [_cite the publication_](https://qupath.readthedocs.io/en/latest/docs/intro/citing.html)!**\n\n*QuPath is an academic project intended for research use only.*\n*The software has been made freely available under the terms of the [GPLv3](https://github.com/qupath/qupath/blob/main/LICENSE) in the hope it is useful for this purpose, and to make analysis methods open and transparent.*\n\n\n## Development \u0026 support\n\nQuPath is being actively developed at the University of Edinburgh by:\n\n* [Pete Bankhead](https://github.com/petebankhead) (creator)\n* [Fiona Inglis](https://github.com/finglis)\n* [Alan O'Callaghan](https://github.com/alanocallaghan)\n* [Léo Leplat](https://github.com/Rylern)\n* [Laura Nicolás-Sáenz](https://github.com/lauranicolass)\n\nPast QuPath dev team members:\n\n* Melvin Gelbard\n* Mahdi Lamb\n\nFor all contributors, see [here](https://github.com/qupath/qupath/graphs/contributors).\n\nThis work is made possible in part thanks to funding from:\n\n* [Wellcome Trust Technology Development Grant](https://wellcome.org/grant-funding/people-and-projects/grants-awarded/qupath-advanced-open-platform-next-generation) (2022-Present)\n* [CZI Essential Open Source Software for Science, Cycle 4](https://chanzuckerberg.com/eoss/proposals/qupath-boosting-bioimage-analysis-for-users-developers/) (2022-Present)\n* [CZI Essential Open Source Software for Science, Cycle 1](https://chanzuckerberg.com/eoss/proposals/qupath-open-source-bioimage-analysis-and-quantitative-pathology/) (2020-2022)\n* Wellcome Trust / University of Edinburgh Institutional Strategic Support Fund (ISSF3) (2019-2020)\n\n\n----\n\n## Background\n\nQuPath was first designed, implemented and documented by Pete Bankhead while at Queen's University Belfast, with additional code and testing by Jose Fernandez.\n\nVersions up to v0.1.2 are copyright 2014-2016 The Queen's University of Belfast, Northern Ireland.\nThese were written as part of projects that received funding from:\n\n* Invest Northern Ireland (RDO0712612)\n* Cancer Research UK Accelerator (C11512/A20256)\n\n\n![Image](https://raw.githubusercontent.com/wiki/qupath/qupath/images/qupath_demo.jpg)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fqupath%2Fqupath","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fqupath%2Fqupath","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fqupath%2Fqupath/lists"}