{"id":18466190,"url":"https://github.com/rainoffallingstar/sell","last_synced_at":"2025-05-05T08:55:54.594Z","repository":{"id":229601175,"uuid":"733829493","full_name":"rainoffallingstar/sell","owner":"rainoffallingstar","description":null,"archived":false,"fork":false,"pushed_at":"2024-04-12T10:01:52.000Z","size":1150,"stargazers_count":1,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"master","last_synced_at":"2025-02-16T17:49:31.151Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/rainoffallingstar.png","metadata":{"files":{"readme":"README.Rmd","changelog":"NEWS.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2023-12-20T08:16:58.000Z","updated_at":"2023-12-21T11:40:28.000Z","dependencies_parsed_at":"2024-03-25T11:25:49.292Z","dependency_job_id":"64d8d6af-b475-4114-a8c6-f2d8c5daa6f4","html_url":"https://github.com/rainoffallingstar/sell","commit_stats":null,"previous_names":["rainoffallingstar/sell"],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rainoffallingstar%2Fsell","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rainoffallingstar%2Fsell/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rainoffallingstar%2Fsell/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rainoffallingstar%2Fsell/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/rainoffallingstar","download_url":"https://codeload.github.com/rainoffallingstar/sell/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":251887385,"owners_count":21659969,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-06T09:15:35.262Z","updated_at":"2025-05-01T14:21:56.606Z","avatar_url":"https://github.com/rainoffallingstar.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"---\noutput: github_document\n---\n\n\u003c!-- README.md is generated from README.Rmd. Please edit that file --\u003e\n\n```{r, include = FALSE}\nknitr::opts_chunk$set(\n  collapse = TRUE,\n  comment = \"#\u003e\",\n  fig.path = \"man/figures/README-\",\n  out.width = \"100%\"\n)\n```\n\n# sell\n\n\u003c!-- badges: start --\u003e\n\u003c!-- badges: end --\u003e\n\u003cimg src=\"https://github.com/rainoffallingstar/sell/blob/master/dev/sell.png\" height=\"200\" align=\"right\"/\u003e\nThe goal of sell is to build a R6-based package for singlecell analysis. Now warped with Seurat V4/V5.\n\n## Installation\n\nYou can install the development version of sell:\n\n``` r\n# FILL THIS IN! HOW CAN PEOPLE INSTALL YOUR DEV PACKAGE?\npak::pak(\"rainoffallingstar/sell\")\n```\n\n## Example\n\nThis is a basic example which shows you how to solve a common problem:\n\n```{r example,eval=FALSE}\nlibrary(sell)\n## basic example code\n## check seurat api\nseurat_api_detect()\n\n## encode your array and pdata into seurat object and take computation\nseurat_object \u003c- seurat_encoder(newdata[[\"arraydata\"]],newdata[[\"pdata\"]],min.cells = 0,\n                           min.features = 0,reduction_dims = 1:5)\n## extract datas from seurat container\n\nsell_list \u003c- seurat_decoder(seurat_object)\n\n## creat a R6 object for single cell: BagEnd\n## In a hole in the ground there lived a lot of cells,lol\n\nsellobject \u003c- BagEndClass$new(arraydata = arraydata,pdata = pdata)\n\n## select interested samples and gene and transform into a long table for further works\nsell_melt_df \u003c- intersect_array_pdata(arraydata,pdata) %\u003e% \n  sell_melt()\n\n\n```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Frainoffallingstar%2Fsell","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Frainoffallingstar%2Fsell","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Frainoffallingstar%2Fsell/lists"}