{"id":19452815,"url":"https://github.com/raivivek/cookiecutter-snakemake","last_synced_at":"2026-06-07T21:32:20.804Z","repository":{"id":70095173,"uuid":"151848075","full_name":"raivivek/cookiecutter-snakemake","owner":"raivivek","description":"Snakemake pipeline using cookiecutter","archived":false,"fork":false,"pushed_at":"2018-10-21T03:30:45.000Z","size":7,"stargazers_count":2,"open_issues_count":0,"forks_count":1,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-01-08T00:20:01.022Z","etag":null,"topics":["cookiecutter","data-science","research-project","snakemake","template"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/raivivek.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2018-10-06T14:30:57.000Z","updated_at":"2023-02-04T12:37:19.000Z","dependencies_parsed_at":"2023-03-11T07:56:50.490Z","dependency_job_id":null,"html_url":"https://github.com/raivivek/cookiecutter-snakemake","commit_stats":null,"previous_names":[],"tags_count":2,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/raivivek%2Fcookiecutter-snakemake","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/raivivek%2Fcookiecutter-snakemake/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/raivivek%2Fcookiecutter-snakemake/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/raivivek%2Fcookiecutter-snakemake/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/raivivek","download_url":"https://codeload.github.com/raivivek/cookiecutter-snakemake/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":240645082,"owners_count":19834389,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["cookiecutter","data-science","research-project","snakemake","template"],"created_at":"2024-11-10T16:48:47.421Z","updated_at":"2026-06-07T21:32:20.749Z","avatar_url":"https://github.com/raivivek.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"## Snakemake (cookiecutter)\n\nRepository provides a _cookiecutter_ template for Snakemake driven analysis.\nThe organization and use case is inspired by Snakemake's heavy use in\nBioinformatics analysis, but feel free to adapt it for your personal use.\n\n## Usage\n\nInstall `cookiecutter` and initialize project (with desired details):\n\n```\npip install cookiecutter\ncookiecutter https://github.com/raivivek/snakemake-cookiecutter\n```\n\n## Try it\n\n```\n$ make dry_run\n\nlocalrule all:\n  jobid: 0\n  reason: Rules with neither input nor output files are always executed.\n\nJob counts:\n  count   jobs\n  1       all\n  1\n```\n\n## Details\n\n```\n{{cookiecutter.project_slug}}\n├── bin\n├── config\n│   ├── cluster.yaml\n│   └── config.yaml\n├── logs\n├── Makefile\n├── README.md\n└── src\n    └── Snakefile\n```\n\n## License\n\nSee [LICENSE](./LICENSE).\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fraivivek%2Fcookiecutter-snakemake","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fraivivek%2Fcookiecutter-snakemake","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fraivivek%2Fcookiecutter-snakemake/lists"}