{"id":23977036,"url":"https://github.com/raphaelvallat/conn_tools","last_synced_at":"2025-02-24T17:25:13.661Z","repository":{"id":107567876,"uuid":"81737614","full_name":"raphaelvallat/conn_tools","owner":"raphaelvallat","description":"Some tools for the extraction and plot of second-level ROI-to-ROI results from CONN Toolbox","archived":false,"fork":false,"pushed_at":"2017-02-16T15:02:42.000Z","size":10,"stargazers_count":25,"open_issues_count":1,"forks_count":9,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-01-07T07:18:13.545Z","etag":null,"topics":["brain","brain-network","conn-toolbox","connectivity","fmri","matrix-visualizer","network-analysis","neuroimaging","neuroscience","plot","spm"],"latest_commit_sha":null,"homepage":"https://raphaelvallat.github.io/conn_plot.html","language":"Matlab","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/raphaelvallat.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2017-02-12T15:54:48.000Z","updated_at":"2024-08-26T13:09:48.000Z","dependencies_parsed_at":"2023-06-08T12:30:57.976Z","dependency_job_id":null,"html_url":"https://github.com/raphaelvallat/conn_tools","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/raphaelvallat%2Fconn_tools","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/raphaelvallat%2Fconn_tools/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/raphaelvallat%2Fconn_tools/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/raphaelvallat%2Fconn_tools/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/raphaelvallat","download_url":"https://codeload.github.com/raphaelvallat/conn_tools/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":240522566,"owners_count":19814953,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["brain","brain-network","conn-toolbox","connectivity","fmri","matrix-visualizer","network-analysis","neuroimaging","neuroscience","plot","spm"],"created_at":"2025-01-07T07:18:21.139Z","updated_at":"2025-02-24T17:25:13.636Z","avatar_url":"https://github.com/raphaelvallat.png","language":"Matlab","funding_links":[],"categories":[],"sub_categories":[],"readme":"# conn_tools\n\nSome tools born from practical needs during the analysis of ROI-to-ROI functional connectivity using the excellent [CONN Toolbox](https://www.nitrc.org/projects/conn). \n\n### 1) Extract and plot brain networks connectivity matrix\n\nAutomatize the extraction and plotting of brain networks connectivity matrix from CONN results folder, using either Matlab or Python\n\nScript:\n\n#### MATLAB\nextract_correl_mat.m\n\nplot_correl_mat.m\n\n#### Python\nconn_correl_mat.py\n\n### 2) Plot BOLD denoised timeseries of a pair of ROIs and compute the correlation coefficient\n\nScript:\n\nconn_plot_ts.m\n\n## Tutorial \u0026 Examples\n\nPlease go [on my website](https://raphaelvallat.github.io/) for some tutorials about these functions","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fraphaelvallat%2Fconn_tools","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fraphaelvallat%2Fconn_tools","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fraphaelvallat%2Fconn_tools/lists"}