{"id":18718008,"url":"https://github.com/rdkit/laplaciannb","last_synced_at":"2025-04-12T13:33:04.201Z","repository":{"id":60986591,"uuid":"523646143","full_name":"rdkit/laplaciannb","owner":"rdkit","description":"LaplacianNB is a Python module developed at Novartis AG for Naive Bayes classifier for laplacian modified models based on scikit-learn Naive Bayes implementation.","archived":false,"fork":false,"pushed_at":"2025-02-28T09:32:56.000Z","size":185,"stargazers_count":12,"open_issues_count":2,"forks_count":1,"subscribers_count":2,"default_branch":"main","last_synced_at":"2025-03-26T08:22:12.888Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"bsd-3-clause","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/rdkit.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"license.txt","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2022-08-11T08:36:05.000Z","updated_at":"2025-02-28T09:27:54.000Z","dependencies_parsed_at":"2025-02-20T13:34:42.505Z","dependency_job_id":null,"html_url":"https://github.com/rdkit/laplaciannb","commit_stats":null,"previous_names":[],"tags_count":9,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rdkit%2Flaplaciannb","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rdkit%2Flaplaciannb/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rdkit%2Flaplaciannb/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rdkit%2Flaplaciannb/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/rdkit","download_url":"https://codeload.github.com/rdkit/laplaciannb/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":248573588,"owners_count":21126865,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-07T13:18:56.647Z","updated_at":"2025-04-12T13:33:04.195Z","avatar_url":"https://github.com/rdkit.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# LaplacianNB\n\n\u003cdiv\u003e\n\n| | |\n| --- | --- |\n| Package | [![PyPI - Version](https://img.shields.io/pypi/v/laplaciannb.svg?logo=pypi\u0026label=PyPI\u0026logoColor=gold)](https://pypi.org/project/laplaciannbs/) [![PyPI - Downloads](https://img.shields.io/pypi/dm/laplaciannb.svg?color=blue\u0026label=Downloads\u0026logo=pypi\u0026logoColor=gold)](https://pypi.org/project/laplaciannb/) [![PyPI - Python Version](https://img.shields.io/pypi/pyversions/laplaciannb.svg?logo=python\u0026label=Python\u0026logoColor=gold)](https://pypi.org/project/laplaciannb/) |\n| Meta | [![code style - black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black) [![types - Mypy](https://img.shields.io/badge/types-Mypy-blue.svg)](https://github.com/python/mypy) [![imports - isort](https://img.shields.io/badge/imports-isort-ef8336.svg)](https://github.com/pycqa/isort) [![License](https://img.shields.io/badge/License-BSD%203--Clause-blue.svg)](https://opensource.org/licenses/BSD-3-Clause) |\n| | |\n\n\u003c/div\u003e\n\n**LaplacianNB** is a Python module developed at **Novartis AG** for a Naive Bayes classifier for Laplacian modified models based on the scikit-learn Naive Bayes implementation.\n\nThis classifier is suitable for binary/boolean data as it uses only indices of the positive bits for prediction. The algorithm was first implemented in Pipeline Pilot and KNIME.\n\n## Features\n\n- Naive Bayes classifier for Laplacian modified models\n- Suitable for binary/boolean data\n- Efficient prediction using indices of positive bits\n\n## Installation\n\nYou can install the package using pip:\n\n```sh\npip install laplaciannb\n```\n\n\n## Literature\n\n```\nNidhi; Glick, M.; Davies, J. W.; Jenkins, J. L. Prediction of biological targets\nfor compounds using multiple-category Bayesian models trained on chemogenomics\ndatabases. J. Chem. Inf. Model. 2006, 46, 1124– 1133,\nhttps://doi.org/10.1021/ci060003g\n\nLam PY, Kutchukian P, Anand R, et al. Cyp1 inhibition prevents doxorubicin-induced cardiomyopathy\nin a zebrafish heart-failure model. Chem Bio Chem. 2020:cbic.201900741.\nhttps://doi.org/10.1002/cbic.201900741\n```\n\n## Authors\n\nAuthor and maintainer: **Bartosz Baranowski** (bartosz.baranowski@novartis.com)\n\n## Maintainers\n\n- **Bartosz Baranowski** (bartosz.baranowski@novartis.com)\n- **Edgar Harutyunyan** (edgar.harutyunyan_ext@novartis.com)\n\n## Changelog\n\n- `v0.6.0` - Move to pdm build\n- `v0.5.0` - Initial release\n\n## License\n\nThis project is licensed under the BSD 3-Clause License - see the [LICENSE](LICENSE) file for details.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Frdkit%2Flaplaciannb","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Frdkit%2Flaplaciannb","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Frdkit%2Flaplaciannb/lists"}