{"id":24318467,"url":"https://github.com/rdmpage/dimacs-dnabarcode-challenge","last_synced_at":"2026-04-20T15:32:23.409Z","repository":{"id":142280138,"uuid":"539650953","full_name":"rdmpage/dimacs-dnabarcode-challenge","owner":"rdmpage","description":"Files from DIMACS 2007 DNA barcoding challenge","archived":false,"fork":false,"pushed_at":"2022-09-21T19:42:14.000Z","size":17028,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":2,"default_branch":"main","last_synced_at":"2025-03-10T18:48:34.564Z","etag":null,"topics":["alignment-free","dna","dna-barcoding","k-mer"],"latest_commit_sha":null,"homepage":"","language":"C","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/rdmpage.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2022-09-21T19:22:43.000Z","updated_at":"2022-09-21T19:42:18.000Z","dependencies_parsed_at":null,"dependency_job_id":"01efbd5b-e8e1-4b01-92fa-0be16b38abc3","html_url":"https://github.com/rdmpage/dimacs-dnabarcode-challenge","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/rdmpage/dimacs-dnabarcode-challenge","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rdmpage%2Fdimacs-dnabarcode-challenge","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rdmpage%2Fdimacs-dnabarcode-challenge/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rdmpage%2Fdimacs-dnabarcode-challenge/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rdmpage%2Fdimacs-dnabarcode-challenge/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/rdmpage","download_url":"https://codeload.github.com/rdmpage/dimacs-dnabarcode-challenge/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rdmpage%2Fdimacs-dnabarcode-challenge/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":32053213,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-04-20T11:35:06.609Z","status":"ssl_error","status_checked_at":"2026-04-20T11:34:48.899Z","response_time":94,"last_error":"SSL_connect returned=1 errno=0 peeraddr=140.82.121.6:443 state=error: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["alignment-free","dna","dna-barcoding","k-mer"],"created_at":"2025-01-17T14:38:12.293Z","updated_at":"2026-04-20T15:32:23.402Z","avatar_url":"https://github.com/rdmpage.png","language":"C","funding_links":[],"categories":[],"sub_categories":[],"readme":"# DIMACS 2007 DNA barcoding challenge\n\nFiles from [DIMACS 2007 DNA barcoding challenge](http://dimacs.rutgers.edu/archive/Workshops/BarcodeResearchChallenges2007/) including test and training data, and code related to papers by Kuksa and Pavlovic. Source code recovered from [http://seqam.rutgers.edu/projects/bioinfo/barcoding/barcoding.html](https://web.archive.org/web/20100331174247/http://seqam.rutgers.edu/projects/bioinfo/barcoding/barcoding.html) using Wayback Machine. Software is in `SSSKernel-0.1c` folder.\n\n\u003e Kuksa P, Huang PH, Pavlovic V: Scalable Algorithms for String Kernels with Inexact Matching. NIPS 2008.\n\n\u003e Kuksa, P., Pavlovic, V. Efficient alignment-free DNA barcode analytics. BMC Bioinformatics 10 (Suppl 14), S9 (2009). [https://doi.org/10.1186/1471-2105-10-S14-S9](https://doi.org/10.1186/1471-2105-10-S14-S9)\n\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Frdmpage%2Fdimacs-dnabarcode-challenge","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Frdmpage%2Fdimacs-dnabarcode-challenge","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Frdmpage%2Fdimacs-dnabarcode-challenge/lists"}