{"id":16702431,"url":"https://github.com/rekyt/funrar","last_synced_at":"2025-03-21T20:32:03.484Z","repository":{"id":55943826,"uuid":"47263274","full_name":"Rekyt/funrar","owner":"Rekyt","description":":package: R package to compute functional rarity indices (functional distinctiveness, uniqueness, restrictedness, scarcity)","archived":false,"fork":false,"pushed_at":"2024-04-12T12:36:53.000Z","size":5632,"stargazers_count":17,"open_issues_count":2,"forks_count":1,"subscribers_count":4,"default_branch":"main","last_synced_at":"2024-10-19T19:42:36.204Z","etag":null,"topics":["ecological-models","ecology","r","r-package","rarity","traits"],"latest_commit_sha":null,"homepage":"https://rekyt.github.io/funrar","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Rekyt.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS.md","contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2015-12-02T13:38:10.000Z","updated_at":"2024-06-09T21:15:25.000Z","dependencies_parsed_at":"2022-08-15T10:00:50.221Z","dependency_job_id":null,"html_url":"https://github.com/Rekyt/funrar","commit_stats":{"total_commits":389,"total_committers":8,"mean_commits":48.625,"dds":0.4550128534704371,"last_synced_commit":"bf8a1ed53e513aab857a4dacbabfe75d70178fbe"},"previous_names":[],"tags_count":11,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Rekyt%2Ffunrar","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Rekyt%2Ffunrar/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Rekyt%2Ffunrar/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Rekyt%2Ffunrar/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Rekyt","download_url":"https://codeload.github.com/Rekyt/funrar/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":221818276,"owners_count":16885712,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["ecological-models","ecology","r","r-package","rarity","traits"],"created_at":"2024-10-12T19:04:44.409Z","updated_at":"2024-10-28T10:44:35.980Z","avatar_url":"https://github.com/Rekyt.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"# `funrar` - Computing Functional rarity indices \u003cimg src=\"man/figures/logo.png\" align=\"right\" style=\"float:right; height:120px;\"/\u003e\n\n\u003c!-- badges: start --\u003e\n[![R-CMD-check](https://github.com/Rekyt/funrar/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/Rekyt/funrar/actions/workflows/R-CMD-check.yaml)\n[![codecov.io](https://codecov.io/github/Rekyt/funrar/coverage.svg?branch=master)](https://codecov.io/github/Rekyt/funrar?branch=master)\n![](http://www.r-pkg.org/badges/version/funrar)\n![](http://cranlogs.r-pkg.org/badges/grand-total/funrar)\n[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.596011.svg)](https://doi.org/10.5281/zenodo.596011)\n\u003c!-- badges: end --\u003e\n\n`funrar` is a package to compute functional rarity indices, it quantifies how species are rare both from a functional and an extent point of view. Following the different facets of rarity proposed by Rabinowitz (1981). See this reference for more details on Functional Rarity indices:\n\n\u003e Violle C., Thuiller W., Mouquet N., Munoz F., Kraft NJB, Cadotte MW, Livingstone SW, Mouillot D., Functional Rarity: The Ecology of Outliers, *Trends in Ecology \u0026 Evolution*, Volume 32, Issue 5, May 2017, Pages 356-367, ISSN 0169-5347, https://doi.org/10.1016/j.tree.2017.02.002.\n\n## Citation\n\nPlease cite the following reference when using `funrar` in a paper:\n\n\u003e Grenié M, Denelle P, Tucker CM, Munoz F, Violle C. funrar: An R package to characterize functional rarity. Divers Distrib. 2017;00:1–7. https://doi.org/10.1111/ddi.12629\n\nor refer to the [CITATION file](inst/CITATION), using:\n\n```r\ncitation(package = \"funrar\")\n```\n\n## Installation\n\nThe package is on CRAN, you can install it using:\n\n```r\ninstall.packages(\"funrar\")\n```\n\nIf you want to have the latest development version use `remotes`:\n\n```r\n# install.packages(\"remotes\") # If 'remotes' is not installed yet\nremotes::install_github(\"Rekyt/funrar\", build_vignettes = TRUE)\n```\n\n\n## Example vignettes\n\nIn addition to code example included in help of functions, two vignettes explain how to use the package. The \n[functional rarity indices](https://rekyt.github.io/funrar/articles/funrar.html) vignette explains \nin details the different indices and function provided; while the \n[sparse matrices](https://rekyt.github.io/funrar/articles/sparse_matrices.html) vignette shows how to use \nsparse matrices to gain speed in memory when computing functional rarity indices.\n\nAccess the vignette through R using the `vignette()` abd `browseVignettes()` functions.\n\n\n## References\n\nRabinowitz D., Seven forms of rarity  In The Biological Aspects of Rare Plant Conservation (1981), pp. 205-217\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Frekyt%2Ffunrar","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Frekyt%2Ffunrar","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Frekyt%2Ffunrar/lists"}