{"id":18143683,"url":"https://github.com/remi-gau/avt_analysis","last_synced_at":"2026-02-06T18:08:19.918Z","repository":{"id":37948512,"uuid":"143008226","full_name":"Remi-Gau/AVT_analysis","owner":"Remi-Gau","description":"Code to analyze audio-visual-tactile high-resolution 7T data","archived":false,"fork":false,"pushed_at":"2025-09-05T07:59:50.000Z","size":15902,"stargazers_count":2,"open_issues_count":13,"forks_count":1,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-09-05T09:35:03.128Z","etag":null,"topics":["cbs-tools","fmri","fmri-data-analysis","fmri-preprocessing","fmri-task-based-analysis","high-resolution","neuroimaging","spm"],"latest_commit_sha":null,"homepage":null,"language":"MATLAB","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Remi-Gau.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2018-07-31T11:59:13.000Z","updated_at":"2025-09-05T07:59:54.000Z","dependencies_parsed_at":"2025-04-23T01:05:23.299Z","dependency_job_id":"6ca6e780-ac6d-4e4a-b2d3-2cad7c1b82f9","html_url":"https://github.com/Remi-Gau/AVT_analysis","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/Remi-Gau/AVT_analysis","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Remi-Gau%2FAVT_analysis","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Remi-Gau%2FAVT_analysis/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Remi-Gau%2FAVT_analysis/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Remi-Gau%2FAVT_analysis/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Remi-Gau","download_url":"https://codeload.github.com/Remi-Gau/AVT_analysis/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Remi-Gau%2FAVT_analysis/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":29171195,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-02-06T16:33:35.550Z","status":"ssl_error","status_checked_at":"2026-02-06T16:33:30.716Z","response_time":59,"last_error":"SSL_connect returned=1 errno=0 peeraddr=140.82.121.5:443 state=error: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["cbs-tools","fmri","fmri-data-analysis","fmri-preprocessing","fmri-task-based-analysis","high-resolution","neuroimaging","spm"],"created_at":"2024-11-01T19:08:31.508Z","updated_at":"2026-02-06T18:08:19.889Z","avatar_url":"https://github.com/Remi-Gau.png","language":"MATLAB","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Audio-visual-tactile 7 tesla\n\nCode for the analysis of the AVT fMRI high-res experiment.\n\n## Dependencies\n\n### fMRI and psychophysics experiment\n\n-   Presentation (?????)\n-   HRTF (MIT and HPC...)\n-   piezzo stimulator (??????)\n-   palamedes to analyze (?????)\n\n### fMRI analysis\n\nYou will need matlab and SPM12 to make use of this code.\n\n| Matlab, toolbox and other dependencies                   | Used version | Purpose                 |\n| -------------------------------------------------------- | ------------ | ----------------------- |\n| [Matlab](https://www.mathworks.com/products/matlab.html) | 2016a        |                         |\n| SPM12                                                    | v6685        | preprocessing, GLM, ... |\n\nOther functions from github and the mathwork file exchange are needed. All of\nthem are shipped with this repo in the `lib` folder or can be pulled from github\nas submodules.\n\nSo to install all the code and its dependencies you simply to run:\n\n```\ngit clone --recurse-submodules https://github.com/Remi-Gau/AVT_analysis.git\n```\n\n## Set up\n\nWhen in the root folder simply run `initEnv` from the matlab prompt to add all\nrelevant folders to the matlab path.\n\n### Settings\n\nFiles used to stored settings are in the following folders:\n\n```\nsrc/settings/\nlib/laminar_tools/src/settings/\n```\n\n### Compiling mex file for PCM analysis\n\nYou might need to compile a a mex file to run the PCM if you are on Linux.\n\n```matlab\ncd(fullfile('lib', 'pcm_toolbox'))\nmex traceABtrans.c\n```\n\n## Recreating figures\n\n### For BOLD and MVPA analysis\n\nThe script `src/figures/PlotBoldProfile.m` will plot the main figures for BOLD\nprofile results.\n\n\n## Development\n\n```\nvirtualenv -p /usr/bin/python3.8 env\nsource env/bin/activate\n\npip install -r requirements.txt\npre-commit install\n```","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fremi-gau%2Favt_analysis","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fremi-gau%2Favt_analysis","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fremi-gau%2Favt_analysis/lists"}