{"id":29203532,"url":"https://github.com/repronim/stuff2nidm","last_synced_at":"2026-01-24T18:01:49.866Z","repository":{"id":286886440,"uuid":"962869139","full_name":"ReproNim/stuff2NIDM","owner":"ReproNim","description":"Repo for the process of adding \"stuff\" (ie the results of fmriprep, etc. processing) to the NIDM graph.","archived":false,"fork":false,"pushed_at":"2025-07-02T09:33:44.000Z","size":712,"stargazers_count":1,"open_issues_count":0,"forks_count":1,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-07-02T10:41:58.128Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/ReproNim.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2025-04-08T19:52:10.000Z","updated_at":"2025-07-02T09:33:48.000Z","dependencies_parsed_at":"2025-04-08T21:27:11.949Z","dependency_job_id":"29bdeb4c-a371-4b5e-b8f1-e1af63c235a6","html_url":"https://github.com/ReproNim/stuff2NIDM","commit_stats":null,"previous_names":["dnkennedy/fmriprep2nidm","repronim/stuff2nidm"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/ReproNim/stuff2NIDM","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ReproNim%2Fstuff2NIDM","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ReproNim%2Fstuff2NIDM/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ReproNim%2Fstuff2NIDM/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ReproNim%2Fstuff2NIDM/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ReproNim","download_url":"https://codeload.github.com/ReproNim/stuff2NIDM/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ReproNim%2Fstuff2NIDM/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":263154352,"owners_count":23422011,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-07-02T14:10:29.576Z","updated_at":"2026-01-24T18:01:49.793Z","avatar_url":"https://github.com/ReproNim.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# \"stuff\"2NIDM\nRepo for the process of adding the results of any processing (for example, fmriprep) to the NIDM graph.\n\nThese examples are designed to be specific examples of a generic [csv2NIDM](https://github.com/incf-nidash/PyNIDM?tab=readme-ov-file#csv-file-to-nidm-conversion) problem.\n\nIn general, the goal is to:\n \n* Run an analysis tool (such as fmriprep),\n* Represent the results of the tool in a CSV file (example [here](CSVs/fmriprep/ABIDE_fmriprep_results_v2.csv))\n* Generate (or fetch) a dictionary for the results as a CSV file (example [here](CSVs/fmriprep/fmriprep_data_dictionary_v3.csv))\n* Generate a tool description file (as a CSV file) that captures the details of the analysis\n   (example [here](CSVs/fmriprep/fmriprep_software_metadata.csv))\n* Use the above 3 CSV files as input to *pynidm* to generate either a standalone NIDM representation of the results\n  of the analysis tool, or append the tool results to the NIDM representation of the dataset that the tool was applied to.\n\n## Examples\n\n### fmriprep\nWe show a worked example for ***fmriprep*** [here](docs/fmriprep.md)\n\n### mriqc\nWe show a worked example for ***mriqc*** [here](docs/mriqc.md)\n\n\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Frepronim%2Fstuff2nidm","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Frepronim%2Fstuff2nidm","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Frepronim%2Fstuff2nidm/lists"}