{"id":20361124,"url":"https://github.com/reubendo/slicerskinsegmentator","last_synced_at":"2026-06-05T12:31:18.800Z","repository":{"id":230273780,"uuid":"776133616","full_name":"ReubenDo/SlicerSkinSegmentator","owner":"ReubenDo","description":"Slicer Module for Skin Segmentator","archived":false,"fork":false,"pushed_at":"2024-03-29T15:33:49.000Z","size":261,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-01-15T03:06:39.831Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/ReubenDo.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-03-22T18:44:07.000Z","updated_at":"2024-03-28T18:55:10.000Z","dependencies_parsed_at":null,"dependency_job_id":"4d469b9c-44f1-4d16-a09f-c63a45b802fe","html_url":"https://github.com/ReubenDo/SlicerSkinSegmentator","commit_stats":null,"previous_names":["reubendo/slicerskinsegmentator"],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ReubenDo%2FSlicerSkinSegmentator","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ReubenDo%2FSlicerSkinSegmentator/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ReubenDo%2FSlicerSkinSegmentator/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ReubenDo%2FSlicerSkinSegmentator/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ReubenDo","download_url":"https://codeload.github.com/ReubenDo/SlicerSkinSegmentator/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":241903977,"owners_count":20040011,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-14T23:46:37.285Z","updated_at":"2026-06-05T12:31:18.789Z","avatar_url":"https://github.com/ReubenDo.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Skin surface Segmentation\n\nThis repository contains the code for a Slicer module that can be used to automatically extract the skin surface in various MR sequences (T1, post-contrast T1, T2, FLAIR).\n\nThis project was initiated during the [36th NA-MIC Project Week](https://projectweek.na-mic.org/PW36_2022_Virtual/Projects/SkinSegmentation/).\n\n## Installation\n\n## Requirements\nYou must install PyTorch before. The easiest way is to use the \"PyTorch\" module available in the \"Extensions manager\". \n\n\n### Option 1\nClone this repository:\n\n```shell\ngit clone https://github.com/ReubenDo/SlicerSkinSegmentator.git\n```\n\n### Option 2\n\n[Download the zipped directory](https://github.com/ReubenDo/SlicerSkinSegmentator/archive/refs/heads/main.zip) and unzip it.\n\n### Add directory in Slicer\n\nIn Slicer, go to `Edit -\u003e Application Settings -\u003e Modules` and add the cloned/downloaded folder to the `Additional module paths`. When prompted, restart Slicer.\n\n## Algorithm description\n\n![Brain Skin Segmentator module](./screenshots/example.png)\n\nTODO\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Freubendo%2Fslicerskinsegmentator","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Freubendo%2Fslicerskinsegmentator","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Freubendo%2Fslicerskinsegmentator/lists"}