{"id":20591736,"url":"https://github.com/rformassspectrometry/mscoreutils","last_synced_at":"2025-04-06T12:12:18.118Z","repository":{"id":35297605,"uuid":"197201727","full_name":"rformassspectrometry/MsCoreUtils","owner":"rformassspectrometry","description":" Core Utils for Mass Spectrometry Data","archived":false,"fork":false,"pushed_at":"2025-03-21T13:09:51.000Z","size":15020,"stargazers_count":16,"open_issues_count":11,"forks_count":11,"subscribers_count":5,"default_branch":"main","last_synced_at":"2025-03-30T11:09:34.786Z","etag":null,"topics":["bioconductor","mass-spectrometry","metabolomics","proteomics","rstats","utils"],"latest_commit_sha":null,"homepage":"https://rformassspectrometry.github.io/MsCoreUtils/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/rformassspectrometry.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS.md","contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2019-07-16T13:41:22.000Z","updated_at":"2025-03-21T12:51:04.000Z","dependencies_parsed_at":"2023-01-16T22:27:00.247Z","dependency_job_id":"97655914-41fc-4aa2-b0de-bf9cf07b4992","html_url":"https://github.com/rformassspectrometry/MsCoreUtils","commit_stats":{"total_commits":426,"total_committers":13,"mean_commits":32.76923076923077,"dds":0.5985915492957746,"last_synced_commit":"0af3afa918bddbd6d2ef5b61538daa5925834be4"},"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rformassspectrometry%2FMsCoreUtils","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rformassspectrometry%2FMsCoreUtils/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rformassspectrometry%2FMsCoreUtils/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rformassspectrometry%2FMsCoreUtils/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/rformassspectrometry","download_url":"https://codeload.github.com/rformassspectrometry/MsCoreUtils/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":247478325,"owners_count":20945266,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioconductor","mass-spectrometry","metabolomics","proteomics","rstats","utils"],"created_at":"2024-11-16T07:41:29.691Z","updated_at":"2025-04-06T12:12:18.085Z","avatar_url":"https://github.com/rformassspectrometry.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Low level functions for MS data\n\n[![Project Status: Active - The project has reached a stable, usable state and is being actively developed.](http://www.repostatus.org/badges/latest/active.svg)](http://www.repostatus.org/#active)\n[![R-CMD-check-bioc](https://github.com/RforMassSpectrometry/MsCoreUtils/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/RforMassSpectrometry/MsCoreUtils/actions?query=workflow%3AR-CMD-check-bioc)\n[![codecov](https://codecov.io/gh/rformassspectrometry/MsCoreUtils/branch/main/graph/badge.svg?token=sv2V5zQjib)](https://codecov.io/gh/rformassspectrometry/MsCoreUtils)\n[![license](https://img.shields.io/badge/license-Artistic--2.0-brightgreen.svg)](https://opensource.org/licenses/Artistic-2.0)\n[![years in bioc](http://bioconductor.org/shields/years-in-bioc/MsCoreUtils.svg)](https://bioconductor.org/packages/release/bioc/html/MsCoreUtils.html)\n[![Ranking by downloads](http://bioconductor.org/shields/downloads/release/MsCoreUtils.svg)](https://bioconductor.org/packages/stats/bioc/MsCoreUtils/)\n[![build release](http://bioconductor.org/shields/build/release/bioc/MsCoreUtils.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/MsCoreUtils/)\n[![build devel](http://bioconductor.org/shields/build/devel/bioc/MsCoreUtils.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/MsCoreUtils/)\n\n\n`MsCoreUtils` defines low-level functions for mass spectrometry data\nand is independent of any high-level data structures.  These functions\ninclude mass spectra processing functions (noise estimation,\nsmoothing, binning, baseline estimation), quantitative aggregation\nfunctions (median polish, robust summarisation, ...), missing data\nimputation, data normalisation (quantiles, vsn, ...)  as well as misc\nhelper functions, that are used across high-level data structure\nwithin the [R for Mass Spectrometry\npackages](https://www.rformassspectrometry.org/pkgs/).\n\nSee the package [homepage](https://rformassspectrometry.github.io/MsCoreUtils)\nfor more information.\n\n\n# Installation\n\nThe package can be installed with\n\n```r\ninstall.packages(\"BiocManager\")\nBiocManager::install(\"MsCoreUtils\")\n```\n\n# Contributions\n\nContributions are highly welcome and should follow the [contribution\nguidelines](https://rformassspectrometry.github.io/RforMassSpectrometry/articles/RforMassSpectrometry.html#contributions).\nAlso, please check the coding style guidelines in the [RforMassSpectrometry\nvignette](https://rformassspectrometry.github.io/RforMassSpectrometry/articles/RforMassSpectrometry.html).\n\n\n## Previous external contributions\n\n- Sigurdur Smarason (@SiggiSmara): weighted moving average (https://github.com/sgibb/MALDIquant/pull/54)\n- Thomas Naake (@tnaake): dotproduct calculation (https://github.com/rformassspectrometry/MsCoreUtils/pull/17)\n- Adriaan Sticker: `robustSummary` aggregation function (originally contributed to `MSnbase`)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Frformassspectrometry%2Fmscoreutils","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Frformassspectrometry%2Fmscoreutils","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Frformassspectrometry%2Fmscoreutils/lists"}