{"id":20591731,"url":"https://github.com/rformassspectrometry/qfeatures","last_synced_at":"2025-04-06T06:07:22.653Z","repository":{"id":37895485,"uuid":"182825919","full_name":"rformassspectrometry/QFeatures","owner":"rformassspectrometry","description":"Quantitative features for mass spectrometry data","archived":false,"fork":false,"pushed_at":"2025-03-22T14:31:33.000Z","size":27402,"stargazers_count":27,"open_issues_count":33,"forks_count":7,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-03-30T05:04:18.011Z","etag":null,"topics":["bioconductor","mass-spectrometry","metabolomics","proteomics","rstats"],"latest_commit_sha":null,"homepage":"https://RforMassSpectrometry.github.io/QFeatures/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/rformassspectrometry.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS.md","contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2019-04-22T16:27:59.000Z","updated_at":"2025-03-22T14:16:28.000Z","dependencies_parsed_at":"2024-01-03T14:28:35.087Z","dependency_job_id":"a0716d13-11ca-4900-90f4-73d419402968","html_url":"https://github.com/rformassspectrometry/QFeatures","commit_stats":{"total_commits":653,"total_committers":7,"mean_commits":93.28571428571429,"dds":0.3721286370597243,"last_synced_commit":"be3fb7c903cfbcc05cc94cd2fe6889f998d2b776"},"previous_names":[],"tags_count":1,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rformassspectrometry%2FQFeatures","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rformassspectrometry%2FQFeatures/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rformassspectrometry%2FQFeatures/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rformassspectrometry%2FQFeatures/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/rformassspectrometry","download_url":"https://codeload.github.com/rformassspectrometry/QFeatures/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":247441049,"owners_count":20939239,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioconductor","mass-spectrometry","metabolomics","proteomics","rstats"],"created_at":"2024-11-16T07:41:29.451Z","updated_at":"2025-04-06T06:07:22.626Z","avatar_url":"https://github.com/rformassspectrometry.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"## Quantitative features for mass spectrometry data\n\n[![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)\n[![R-CMD-check-bioc](https://github.com/RforMassSpectrometry/QFeatures/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/RforMassSpectrometry/QFeatures/actions?query=workflow%3AR-CMD-check-bioc)\n[![codecov.io](https://codecov.io/github/rformassspectrometry/QFeatures/coverage.svg?branch=master)](https://codecov.io/github/rformassspectrometry/QFeatures?branch=master)\n[![license](https://img.shields.io/badge/license-Artistic--2.0-brightgreen.svg)](https://opensource.org/licenses/Artistic-2.0)\n\n\u003cimg src=\"man/figures/logo.png\" align=\"right\" height=\"139\" alt=\"\" /\u003e\n\n### What is QFeatures?\n\n\n`QFeatures` is a [Bioconductor\npackage](http://bioconductor.org/packages/QFeatures) that provides\ninfrastructure to management and process quantitative features for\nhigh-throughput mass spectrometry-based proteomics assays. It provides\na familiar Bioconductor user experience to manage quantitative data\nacross different assay levels (such as precursors, peptide spectrum\nmatches, peptides and proteins or protein groups) in a coherent and\ntractable format.\n\nIf you are familiar with the `MSnbase` package, `QFeatures` could be\nsummarised with:\n\n\u003e Evolving `MSnSet` data towards `SummarizedExperiment`, but for\n\u003e proteomics data.\n\n### Getting started\n\nThe `QFeatures` class is used to manage and process quantitative\nfeatures for high-throughput mass spectrometry assays. See the\n[QFeatures\nintroduction](https://rformassspectrometry.github.io/QFeatures/articles/QFeatures.html)\nto get started and the [Processing quantitative proteomics data with\nQFeatures](https://rformassspectrometry.github.io/QFeatures/articles/Processing.html)\nvignette for a real-life application. Visualisation of quantitative\nmass spectrometry data contained in a `QFeatures` object is\nillustrated in the [Data\nvisualisation](https://rformassspectrometry.github.io/QFeatures/articles/Visualization.html)\nvignette.\n\n### License\n\nThe `QFeatures` code is provided under a permissive [Artistic 2.0\nlicense](https://opensource.org/licenses/Artistic-2.0). The\ndocumentation, including the manual pages and the vignettes, are\ndistributed under a [CC BY-SA\nlicense](https://creativecommons.org/licenses/by-sa/4.0/).","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Frformassspectrometry%2Fqfeatures","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Frformassspectrometry%2Fqfeatures","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Frformassspectrometry%2Fqfeatures/lists"}