{"id":38683492,"url":"https://github.com/rigdenlab/conkit","last_synced_at":"2026-01-17T10:18:03.832Z","repository":{"id":27171865,"uuid":"30641512","full_name":"rigdenlab/conkit","owner":"rigdenlab","description":"Contact Prediction ToolKit","archived":false,"fork":false,"pushed_at":"2025-08-21T13:18:18.000Z","size":14155,"stargazers_count":21,"open_issues_count":4,"forks_count":9,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-09-25T14:51:28.946Z","etag":null,"topics":["contact-prediction","python"],"latest_commit_sha":null,"homepage":"https://www.conkit.org/en/latest/","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"bsd-3-clause","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/rigdenlab.png","metadata":{"files":{"readme":"README.rst","changelog":"CHANGELOG.rst","contributing":null,"funding":null,"license":"LICENSE.txt","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2015-02-11T09:58:20.000Z","updated_at":"2025-06-05T02:19:46.000Z","dependencies_parsed_at":"2025-08-21T15:17:29.779Z","dependency_job_id":"cb47ee46-8b1d-47ef-9f86-e711745a6955","html_url":"https://github.com/rigdenlab/conkit","commit_stats":null,"previous_names":[],"tags_count":26,"template":false,"template_full_name":null,"purl":"pkg:github/rigdenlab/conkit","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rigdenlab%2Fconkit","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rigdenlab%2Fconkit/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rigdenlab%2Fconkit/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rigdenlab%2Fconkit/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/rigdenlab","download_url":"https://codeload.github.com/rigdenlab/conkit/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rigdenlab%2Fconkit/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":28506061,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-01-17T06:57:29.758Z","status":"ssl_error","status_checked_at":"2026-01-17T06:56:03.931Z","response_time":85,"last_error":"SSL_read: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["contact-prediction","python"],"created_at":"2026-01-17T10:18:02.978Z","updated_at":"2026-01-17T10:18:03.818Z","avatar_url":"https://github.com/rigdenlab.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"..\n\n**************************\nContact Prediction ToolKit\n**************************\n\n**A Python Interface to Contact Predictions**\n\n.. image:: https://img.shields.io/badge/DOI-10.1093%2Fbioinformatics%2Fbtx148-blue.svg\n   :target: https://doi.org/10.1093/bioinformatics/btx148\n   :alt: DOI Status\n\n.. image:: https://img.shields.io/pypi/v/conkit.svg\n   :target: https://pypi.python.org/pypi/conkit\n   :alt: PyPi Package\n\n.. image:: https://img.shields.io/pypi/pyversions/conkit.svg\n   :target: https://pypi.python.org/pypi/conkit\n   :alt: Python Versions\n\n.. image:: https://readthedocs.org/projects/conkit/badge/?version=latest\n   :target: https://conkit.readthedocs.io/en/latest/\n   :alt: Documentation Status\n\n.. image:: https://github.com/rigdenlab/conkit/workflows/Build/badge.svg\n   :alt: Build Status\n\n**NEW: Now ConKit is also compatible with residue-residue distance predictions**\n\nConKit is a Python library to provide a data object hierarchy and associated routine operations to\nwork and manipulate residue-residue contact prediction data. Main features shipped with this library\ninclude:\n\n- Parsers for Multiple Sequence Alignment, contact prediction and residue distance prediction files\n- Analysis functions for Multiple Sequence Alignment, contact prediction data and residue distance prediction data\n- Visualisation of Multiple Sequence Alignment, contact prediction data and residue distance prediction data\n- Validation of models based on residue distance predictions\n- Python wrappers for the contact-prediction-related software\n\nFor a general overview of ConKit, watch `this video \u003chttps://youtu.be/YhHkfa7ggAE\u003e`_.\n\nFor an overview of model validation with ConKit, watch this `video \u003chttps://www.youtube.com/watch?v=rG_WoUhdnLU\u0026t=565s\u003e`_.\n\n.. CHECKPOINT FOR READTHEDOCS \n\nInstallation \u0026 Usage\n++++++++++++++++++++\nPlease refer to `ConKit's documentation \u003chttp://www.conkit.org/en/latest/install.html\u003e`_.\n\nContributing\n++++++++++++\nThere are two ways by which you can contribute to ConKit:\n\n1. Submit any suggestions to the `GitHub Issue Tracker`_, or\n2. Fork this repository, commit your changes and submit a pull request.\n\nFound a Bug?\n++++++++++++\nPlease use the `GitHub Issue Tracker`_.\n\n.. _GitHub Issue Tracker: https://github.com/rigdenlab/conkit/issues\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Frigdenlab%2Fconkit","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Frigdenlab%2Fconkit","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Frigdenlab%2Fconkit/lists"}