{"id":22911415,"url":"https://github.com/rjray/mscs-thesis-project","last_synced_at":"2025-05-09T01:29:55.575Z","repository":{"id":61557564,"uuid":"496778626","full_name":"rjray/mscs-thesis-project","owner":"rjray","description":"Evaluating Languages for Bioinformatics: Performance, Expressiveness and Energy","archived":false,"fork":false,"pushed_at":"2022-12-08T20:44:55.000Z","size":10389,"stargazers_count":4,"open_issues_count":0,"forks_count":2,"subscribers_count":2,"default_branch":"main","last_synced_at":"2025-03-31T20:38:09.732Z","etag":null,"topics":["bioinformatics","c","cplusplus","energy-consumption","energy-efficiency","expressiveness","performance-analysis","perl","python","rapl","rust","static-analysis","string-matching"],"latest_commit_sha":null,"homepage":"","language":"TeX","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/rjray.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2022-05-26T21:37:09.000Z","updated_at":"2025-01-18T13:36:55.000Z","dependencies_parsed_at":"2023-01-25T18:15:18.316Z","dependency_job_id":null,"html_url":"https://github.com/rjray/mscs-thesis-project","commit_stats":null,"previous_names":[],"tags_count":3,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rjray%2Fmscs-thesis-project","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rjray%2Fmscs-thesis-project/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rjray%2Fmscs-thesis-project/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rjray%2Fmscs-thesis-project/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/rjray","download_url":"https://codeload.github.com/rjray/mscs-thesis-project/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":253173967,"owners_count":21865781,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioinformatics","c","cplusplus","energy-consumption","energy-efficiency","expressiveness","performance-analysis","perl","python","rapl","rust","static-analysis","string-matching"],"created_at":"2024-12-14T04:16:44.762Z","updated_at":"2025-05-09T01:29:55.551Z","avatar_url":"https://github.com/rjray.png","language":"TeX","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Repository for my MSCS Thesis Work\n\nThis repository holds all the files (source code, LaTeX, etc.) for my thesis\nproject, \"Evaluating Languages for Bioinformatics: Performance, Expressiveness\nand Energy\".\n\nThis project performs comparisons of five langauges: C, C++, Perl, Python and\nRust. Measurements are taken on relative performance, expressiveness and energy\nusage. A variety of string-matching algorithms are implemented and applied to\nsimulated DNA sequence data.\n\nThe directory `src` contains all the program source code for all languages and\nfor the harness utility used to run the experiments.\n\nThe directory `thesis` contains all the LaTeX source for the thesis, as well as\nimage files used for some of the diagrams.\n\nIn addition, the following files are also present in this top-level directory:\n\n* **compression-20221111.txt** - Snapshot of the compression data\n* **cyclomatic-20221111.csv**\n* **cyclomatic-20221111.json**\n* **cyclomatic-20221111.yaml** - Snapshot of the cyclomatic complexity data\n* **draft-20221116.pdf** - The draft as submitted to the thesis committee on 2022-11-16\n* **experiments-data-20221111.yml**\n* **experiments-data-20221120.yml**\n* **experiments-data-20221124.yml** - Preserved data from full experiments runs. The 2022-11-11 data was used for all tables and diagrams in the thesis. The others are subsequent full runs of the experiments for comparison purposes.\n* **sloc-20221111.csv** - Snapshot of the SLOC data\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Frjray%2Fmscs-thesis-project","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Frjray%2Fmscs-thesis-project","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Frjray%2Fmscs-thesis-project/lists"}