{"id":16265003,"url":"https://github.com/robaina/brendapyrser","last_synced_at":"2025-03-30T11:31:35.868Z","repository":{"id":57416335,"uuid":"299416438","full_name":"Robaina/BRENDApyrser","owner":"Robaina","description":"A Python parser for the BRENDA database","archived":false,"fork":false,"pushed_at":"2023-09-15T17:50:18.000Z","size":719,"stargazers_count":29,"open_issues_count":2,"forks_count":7,"subscribers_count":1,"default_branch":"master","last_synced_at":"2025-03-26T01:36:54.581Z","etag":null,"topics":["biochemistry","bioinformatics","brenda","computational-biology","enzyme","enzyme-kinetics","metabolism","python"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"apache-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Robaina.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":".github/CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2020-09-28T19:51:59.000Z","updated_at":"2025-03-22T11:50:00.000Z","dependencies_parsed_at":"2024-10-23T01:33:32.856Z","dependency_job_id":null,"html_url":"https://github.com/Robaina/BRENDApyrser","commit_stats":{"total_commits":91,"total_committers":4,"mean_commits":22.75,"dds":0.3076923076923077,"last_synced_commit":"2e08e6be582c23887120dc97b45b5a4f4d5e2a77"},"previous_names":["robaina/brenda_database"],"tags_count":3,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Robaina%2FBRENDApyrser","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Robaina%2FBRENDApyrser/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Robaina%2FBRENDApyrser/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Robaina%2FBRENDApyrser/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Robaina","download_url":"https://codeload.github.com/Robaina/BRENDApyrser/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":246314011,"owners_count":20757450,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["biochemistry","bioinformatics","brenda","computational-biology","enzyme","enzyme-kinetics","metabolism","python"],"created_at":"2024-10-10T17:05:17.541Z","updated_at":"2025-03-30T11:31:34.864Z","avatar_url":"https://github.com/Robaina.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"![logo](assets/logo.png)\n## a Python package to parse and manipulate the BRENDA database\n\n[![tests](https://github.com/Robaina/BRENDApyrser/actions/workflows/tests.yml/badge.svg)](https://github.com/Robaina/BRENDApyrser/actions/workflows/tests.yml)\n[![codecov](https://codecov.io/gh/Robaina/BRENDApyrser/graph/badge.svg?token=214SPFXRTG)](https://codecov.io/gh/Robaina/BRENDApyrser)\n![PyPI](https://img.shields.io/pypi/v/brendapyrser)\n![GitHub release (latest by date)](https://img.shields.io/github/v/release/Robaina/Brendapyrser)\n[![GitHub license](https://img.shields.io/github/license/Robaina/BRENDApyrser)](https://github.com/Robaina/BRENDApyrser/blob/master/LICENSE)\n![Contributor Covenant](https://img.shields.io/badge/Contributor%20Covenant-v2.0%20adopted-ff69b4)\n[![DOI](https://zenodo.org/badge/299416438.svg)](https://zenodo.org/badge/latestdoi/299416438)\n\n## What is Brendapyrser?\nThis project provides python classes and functions to parse the text file containing the entire BRENDA enzyme database (https://www.brenda-enzymes.org)\n\nThis is an ongoing project!\n\n## Installation\n1. ```pip install brendapyrser```\n\nor\n\n2. Git clone project to local directory.\n\n   In terminal navigate to directory and enter: ```python setup.py install```\n\n## Usage\n\nDue to BRENDA's license, BRENDA's database cannot be downloaded directly by the parser, instead, the user is asked to download the database as a text file after accepting usage conditions [here](https://www.brenda-enzymes.org/download.php).\n\nYou can find a jupyter notebook with usage examples [here](docs/examples.ipynb).\n\n## Contribute\n\nContributions are always more than welcome! Feel free to fork, make changes and pull requests. If you don't know where to start, you can always browse open issues. Thanks!\n\n## Citation\n\nIf you use this software, please cite it as below:\n\nRobaina-Estévez, S. (2022). BRENDApyrser: a Python package to parse and manipulate the BRENDA database (Version 0.0.3)[Computer software]. https://doi.org/10.5281/zenodo.7026555\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Frobaina%2Fbrendapyrser","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Frobaina%2Fbrendapyrser","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Frobaina%2Fbrendapyrser/lists"}