{"id":16265065,"url":"https://github.com/robaina/pcp2016","last_synced_at":"2026-02-01T20:04:07.596Z","repository":{"id":123157638,"uuid":"98023084","full_name":"Robaina/PCP2016","owner":"Robaina","description":"Supplementary Information","archived":false,"fork":false,"pushed_at":"2017-07-22T10:08:29.000Z","size":1935,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":0,"default_branch":"master","last_synced_at":"2025-10-27T15:57:27.416Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Matlab","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Robaina.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2017-07-22T10:03:59.000Z","updated_at":"2017-07-22T10:08:30.000Z","dependencies_parsed_at":"2023-04-23T05:47:59.320Z","dependency_job_id":null,"html_url":"https://github.com/Robaina/PCP2016","commit_stats":{"total_commits":3,"total_committers":1,"mean_commits":3.0,"dds":0.0,"last_synced_commit":"17a4d431675c56fc14ed91d187c1a17354ee5e20"},"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/Robaina/PCP2016","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Robaina%2FPCP2016","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Robaina%2FPCP2016/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Robaina%2FPCP2016/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Robaina%2FPCP2016/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Robaina","download_url":"https://codeload.github.com/Robaina/PCP2016/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Robaina%2FPCP2016/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":28988432,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-02-01T18:17:03.387Z","status":"ssl_error","status_checked_at":"2026-02-01T18:16:57.287Z","response_time":56,"last_error":"SSL_read: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-10-10T17:05:57.435Z","updated_at":"2026-02-01T20:04:07.566Z","avatar_url":"https://github.com/Robaina.png","language":"Matlab","funding_links":[],"categories":[],"sub_categories":[],"readme":"# PCP2016\nSupplementary Information\nThis file includes the code and data used in the study:\n\nMetabolic Network Constrains Gene Regulation of C4 Photosynthesis: The Case of Maize\n\nSemidán Robaina-Estévez, Zoran Nikoloski\nPlant and Cell Physiology, 2016\n\n*******************************************************\nThe files\n  MaizeMoldel1 corresponds to the Maize Leaf Model\n  MaizeModel2 corresponds to the Evidenced Maize Leaf Model\n\nBoth are taken from Seaver et al.,2015 Front. Plant Science\n\n\nLeafData1=: Expression data from Wang et al., 2014, already mapped to MaizeModel1\n\n\nLeafDataSub2=: Expression data from Pick et al., 2011, already\nmapped to MaizeModel2\n\n\nThe original xml files of the used models are also provided (they have to be read into a COBRA structure)\n\nThe original expression data as well as gene identifiers are also provided\n\nThe function EXAMPLE serves as an example of the implementation of all code used in this study for the case of the maize leaf model (MaizeModel1) and LeafData1 (Wang et al, 2014)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Frobaina%2Fpcp2016","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Frobaina%2Fpcp2016","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Frobaina%2Fpcp2016/lists"}