{"id":17592310,"url":"https://github.com/robertaboukhalil/alignment-sandbox","last_synced_at":"2025-04-29T11:41:01.456Z","repository":{"id":45743837,"uuid":"261030350","full_name":"robertaboukhalil/alignment-sandbox","owner":"robertaboukhalil","description":"Tool for exploring sequence alignment algorithms","archived":false,"fork":false,"pushed_at":"2024-08-30T21:12:54.000Z","size":1341,"stargazers_count":13,"open_issues_count":1,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-03-30T12:11:33.539Z","etag":null,"topics":["algorithms","alignment","bioinformatics","genomics","needleman-wunsch","smith-waterman","webassembly"],"latest_commit_sha":null,"homepage":"https://alignment.sandbox.bio","language":"Svelte","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/robertaboukhalil.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2020-05-03T22:09:52.000Z","updated_at":"2024-09-10T00:22:41.000Z","dependencies_parsed_at":"2025-03-08T13:33:34.030Z","dependency_job_id":"434b4af0-3581-4ffe-9128-34c5521ba673","html_url":"https://github.com/robertaboukhalil/alignment-sandbox","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/robertaboukhalil%2Falignment-sandbox","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/robertaboukhalil%2Falignment-sandbox/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/robertaboukhalil%2Falignment-sandbox/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/robertaboukhalil%2Falignment-sandbox/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/robertaboukhalil","download_url":"https://codeload.github.com/robertaboukhalil/alignment-sandbox/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":251495444,"owners_count":21598486,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["algorithms","alignment","bioinformatics","genomics","needleman-wunsch","smith-waterman","webassembly"],"created_at":"2024-10-22T05:09:46.775Z","updated_at":"2025-04-29T11:41:01.434Z","avatar_url":"https://github.com/robertaboukhalil.png","language":"Svelte","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Alignment Sandbox\n\nAn interactive web tool for exploring the sequence alignment algorithms Smith-Waterman and Needleman-Wunsch, powered by WebAssembly.\n\n![Screenshot](https://alignment.sandbox.bio/assets/img/screenshot.png)\n\n\n## How to use Alignment Sandbox?\n\nYou can use the hosted version at [alignment.sandbox.bio](http://alignment.sandbox.bio).\n\nOr, to run it locally:\n\n```bash\nnpm install\nnpm run build\n```\n\nand open the `index.html` file in your browser.\n\n\n## How it works\n\n- To perform the sequence alignment, Alignment Sandbox runs the C tool [seq-align](https://github.com/noporpoise/seq-align) directly in the browser using WebAssembly. For details about the compilation from C to WebAssembly, see the [biowasm](https://github.com/biowasm/biowasm) project.\n- Alignment Sandbox uses the [aioli](https://github.com/biowasm/aioli) library to run the WebAssembly module in a WebWorker.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Frobertaboukhalil%2Falignment-sandbox","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Frobertaboukhalil%2Falignment-sandbox","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Frobertaboukhalil%2Falignment-sandbox/lists"}