{"id":17592305,"url":"https://github.com/robertaboukhalil/oct4th","last_synced_at":"2025-04-29T11:56:41.032Z","repository":{"id":54704157,"uuid":"270426708","full_name":"robertaboukhalil/oct4th","owner":"robertaboukhalil","description":"CLI for converting CSV/TSV files to Excel spreadsheets without mangling gene names","archived":false,"fork":false,"pushed_at":"2023-07-12T02:44:21.000Z","size":15,"stargazers_count":3,"open_issues_count":0,"forks_count":1,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-04-29T11:56:35.304Z","etag":null,"topics":["excel","genes"],"latest_commit_sha":null,"homepage":"https://pypi.org/manage/project/oct4th","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/robertaboukhalil.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2020-06-07T20:39:54.000Z","updated_at":"2023-12-20T02:28:11.000Z","dependencies_parsed_at":"2024-10-23T01:05:40.127Z","dependency_job_id":null,"html_url":"https://github.com/robertaboukhalil/oct4th","commit_stats":{"total_commits":21,"total_committers":2,"mean_commits":10.5,"dds":0.04761904761904767,"last_synced_commit":"a405b8c8d83b35b331109c5901a8dc828febcd5b"},"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/robertaboukhalil%2Foct4th","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/robertaboukhalil%2Foct4th/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/robertaboukhalil%2Foct4th/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/robertaboukhalil%2Foct4th/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/robertaboukhalil","download_url":"https://codeload.github.com/robertaboukhalil/oct4th/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":251498965,"owners_count":21598979,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["excel","genes"],"created_at":"2024-10-22T05:09:44.740Z","updated_at":"2025-04-29T11:56:41.014Z","avatar_url":"https://github.com/robertaboukhalil.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# oct4th\n------------------\n\n\nCLI tool to convert CSV/TSV files to Excel spreadsheets, while not converting gene names (e.g. OCT4, DEC1) into dates in the process.\n\nFor converting small files, you can use the [Oct4th web application](https://oct4th.sandbox.bio).\n\nTo learn more about this issue, check out [this article](https://medium.com/@robaboukhalil/how-to-fix-excels-gene-to-date-conversion-5c98d0072450).\n\n## Installation\n\n```bash\npip3 install -U oct4th\n```\n\n\n## Usage\n\n### As a CLI:\n\n```bash\n# Convert a CSV file to XLSX\noct4th --input ./data/test.csv --output ./data/test.xlsx\n```\n\n### From Python:\n\n```python\nimport oct4th\n\n# Convert a CSV file to XLSX\noct4th.csv_to_xlsx(file_in=\"./data/test.csv\", file_out=\"./data/test.xlsx\")\n```\n\n## Developing\n\n```bash\npython3 -m venv ve\n. ve/bin/activate\npip install setuptools wheel twine pytest xlsxwriter pandas xlrd\n```\n\n## Run Tests\n\n```bash\nPYTHONPATH=. pytest ./tests/\n```\n\n## Deploy\n\n```bash\n# Clean up and rebuild\n. ve/bin/activate\nrm -rf ./build/ ./dist/\npython3 setup.py sdist bdist_wheel\n\n# Check before deploying\ntwine check dist/*\n\n# Upload to testpypi\npython3 -m twine upload --repository testpypi dist/*\n\n# Test install\ndeactivate; pip3 install -U -i https://test.pypi.org/simple/ oct4th==1.0.0b9\n\n# Deploy to pypi\n# python3 -m twine upload --repository pypi dist/*\n```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Frobertaboukhalil%2Foct4th","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Frobertaboukhalil%2Foct4th","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Frobertaboukhalil%2Foct4th/lists"}