{"id":13695083,"url":"https://github.com/rseng/awesome-rseng","last_synced_at":"2026-02-21T13:13:46.536Z","repository":{"id":41897627,"uuid":"243113464","full_name":"rseng/awesome-rseng","owner":"rseng","description":"A curated list of GitHub organizations that primarily serve open source or academic software projects.","archived":false,"fork":false,"pushed_at":"2022-06-02T14:05:02.000Z","size":122,"stargazers_count":30,"open_issues_count":1,"forks_count":8,"subscribers_count":8,"default_branch":"master","last_synced_at":"2024-05-23T07:12:56.875Z","etag":null,"topics":["awesome-list","awesome-rseng","hacktoberfest","research-software-engineering","rseng"],"latest_commit_sha":null,"homepage":"https://rseng.github.io/awesome-rseng/","language":"Shell","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/rseng.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":".github/CONTRIBUTING.md","funding":null,"license":null,"code_of_conduct":".github/CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2020-02-25T22:11:56.000Z","updated_at":"2024-03-28T19:54:04.000Z","dependencies_parsed_at":"2022-07-09T00:00:27.087Z","dependency_job_id":null,"html_url":"https://github.com/rseng/awesome-rseng","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rseng%2Fawesome-rseng","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rseng%2Fawesome-rseng/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rseng%2Fawesome-rseng/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rseng%2Fawesome-rseng/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/rseng","download_url":"https://codeload.github.com/rseng/awesome-rseng/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":223681406,"owners_count":17184945,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["awesome-list","awesome-rseng","hacktoberfest","research-software-engineering","rseng"],"created_at":"2024-08-02T18:00:16.702Z","updated_at":"2026-02-21T13:13:46.473Z","avatar_url":"https://github.com/rseng.png","language":"Shell","funding_links":[],"categories":["Related Lists","Other Lists"],"sub_categories":["DE","TeX Lists"],"readme":"\u003cp align=\"center\"\u003e\n  \u003cbr\u003e\n    \u003cimg width=\"50%\" src=\"awesome.svg\" /\u003e\n  \u003cbr\u003e\n  \u003cbr\u003e\n  \u003cbr\u003e\n\u003c/p\u003e\n\n## Awesome Research Software Engineering [![Awesome](https://cdn.rawgit.com/sindresorhus/awesome/d7305f38d29fed78fa85652e3a63e154dd8e8829/media/badge.svg)](https://github.com/sindresorhus/awesome) [![https://good-labs.github.io/greater-good-affirmation/assets/images/badge.svg](https://good-labs.github.io/greater-good-affirmation/assets/images/badge.svg)](https://good-labs.github.io/greater-good-affirmation) [![Gitter](https://badges.gitter.im/rseng/community.svg)](https://gitter.im/rseng/community?utm_source=badge\u0026utm_medium=badge\u0026utm_campaign=pr-badge)\n\n\u003e A curated list of GitHub organizations that primarily serve open source or academic software projects.\n\nIf you want to get involved with science and research software engineering, this is a good place to start! If you want to use the GitHub action, [see rseng/good-first-issues](https://github.com/rseng/good-first-issues).\n\n## Contents\n\n - [Overview](#overview)\n - [Astrophysics](#astrophysics)\n - [Environment](#environment)\n - [Genomics](#genomics)\n - [Geoscience](#geoscience)\n - [Health and Medicine](#health-and-medicine)\n   - [Epidemiology](#epidemiology)\n - [High Performance Computing](#high-performance-computing)\n - [Institutions](#institutions)\n   - [Academic Groups](#academic-groups)\n   - [Academic Labs](#academic-labs)\n   - [National Labs](#national-labs)\n - [Materials Science](#materials-science)\n   - [Neutron Scattering](#neutron-scattering)\n - [Neuroscience](#neuroscience)\n - [Probabilistic Programming](#probabilistic-programming)\n - [Psychology](#psychology)\n - [Reproducible Science](#reproducible-science)\n   - [Containers](#containers)\n   - [Workflows](#workflows)\n - [Training](#training)\n - [Contributing](#contributing)\n\n\n## Overview\n\nIf you are interested in research software engineering, and especially looking to\nhelp with research software, this is a small, manually curated list of GitHub\norganizations that have primarily this focus. The projects are organized by domain,\nand then subtopics. Please feel free to suggest a new project, or update the organization.\n\n## Astrophysics\n\n - [LSST](https://github.com/lsst) the legacy survey of space and time\n - [LSST Camera Data Handling](https://github.com/lsst-camera-dh/)\n\n## Environment\n\n - [The National Capital Project](https://github.com/natcap): technology for people and nature, see [the website](https://naturalcapitalproject.stanford.edu/).\n\n## Genomics\n\n - [The ENCODE Data Consortium](https://github.com/encode-dcc) or \"Encode DCC\" serving the Encode Data Portal.\n\n## Geoscience\n\n - [Pangeo](https://github.com/pangeo-data): A community effort for big data geoscience\n\n## Health and Medicine\n\n### Epidemiology\n\n - [MRC Centre for Outbreak Analysis and Modelling](https://github.com/mrc-ide/): open source software for the [MRC centre for global infectious disease analysis](https://www.imperial.ac.uk/mrc-global-infectious-disease-analysis)\n - [VIMC](https://github.com/vimc/): open source code to support the [Vaccine Impact Modelling Consortium](https://vaccineimpact.org/).\n - [Reside IC](https://github.com/reside-ic/): Research Software for the Infectious Disease Epidemiology @ Imperial College [team](https://reside-ic.github.io/about/).\n\n\n## High Performance Computing\n\n - [CEED](https://github.com/CEED): ECP Co-Design Center for Efficient Exascale Discretizations (CEED)\n - [spack](https://github.com/spack/) a flexible package manager for multiple versions, configurations, and compilers\n - [RADIUSS](https://software.llnl.gov/radiuss/): Rapid Application Development via an Institutional Universal Software Stack\n\n## Institutions\n\n### Academic Groups\n\n- [Imperial College London](https://github.com/ImperialCollegeLondon/)\n\n### Academic Labs\n\n - [Nolan Lab](https://github.com/nolanlab) at Stanford University focuses on signaling in the immune system and study of oncogenic process.\n - [Poldrack Lab](https://github.com/poldracklab) at Stanford University focuses on standard\n   workflows for processing structural and functional neuroimaging (MRI) data.\n\n### National Labs\n\n - [SLAC](https://github.com/slaclab) National Accelerator Laboratory\n - [LINAC Coherent Light Source](https://github.com/slac-lcls/) at SLAC for experiments with High Energy Physics, Materials Science, Biologists, etc.\n - [ORNL](https://github.com/ORNL/) Oak Ridge National Laboratory\n - [OLCF](https://github.com/OLCF/) Oak Ridge Leadership Computing Facility\n - [BNL](https://github.com/BrookhavenNationalLaboratory/) Brookhaven National Laboratory\n - [BNL-SDCC](https://github.com/bnl-sdcc/) Brookhaven National Laboratory Scientific Data and Computing Center\n - [NSLS-II](https://github.com/NSLS-II) National Synchrotron Light Source II at Brookhaven National Laboratory\n - [BNL-NPP](https://github.com/BNLNPPS) Brookhaven National Laboratory Nuclear and Particle Physics Software Group\n - [LLNL](https://github.com/LLNL) Lawrence Livermore National Laboratory (and its [Software Portal](https://software.llnl.gov))\n\n## Materials Science\n\n### Neutron Scattering\n\n - [Mantid Project](https://github.com/mantidproject) Framework for analysis and visualization of neutron scattering and muon spectroscopy data\n - [neutrons](https://github.com/neutrons) Neutron Scattering Softwares, mainly for [ORNL Facilities](https://neutrons.ornl.gov/)\n\n## Neuroscience\n\n - [nipreps](https://github.com/nipreps) standard workflows for processing a wide\n   variety of neuroimaging (MRI) data.\n - [nipy](https://github.com/nipy) utilities for working with neuroimaging (MRI) data\n\n## Probabilistic Programming\n\n - [The Turing Language](https://github.com/TuringLang) Bayesian inference with probabilistic programming using the Julia language\n\n## Psychology\n\n - [The Experiment Factory](https://github.com/expfactory) tools, containers, and web based experiments\n\n## Reproducible Science\n\n## Containers\n\n - [singularityhub](https://github.com/singularityhub/) open source tools to support Singularity containers.\n\n\n## Workflows\n\n - [Snakemake](https://github.com/snakemake/) scientific workflow manager written in Python\n\n## Training\n \n - [CarpenPi](https://github.com/CarpenPi) Running Carpentries Training on Raspberry Pis\n\n## Contributing\n\nPlease don't hesitate to contribute a new link. To do so, check out the [CONTRIBUTING.md](.github/CONTRIBUTING.md) for details about how to contribute.\n\n### Add Organization to the Awesome List\nThe awesome list here is intended for organizations.\nYou can edit the README.md file here and add your link in the correct spot. If \na category is missing, please go ahead and add it, and make sure that all\nadditions are in alphabetical order. Then [open a pull request](https://www.github.com/rseng/awesome-opensource-rseng/issues). \n\n### Add Repository\n\nThis repository also serves a \"Good First Issues\" portal, primarily for specific\nrepos that belong to the organizations listed above. If you are interested in\nadding a specific repository, add it to the [repos list](.github/repos.txt).\nYou can add comma separated tags that you want to use as categories or topics\nto identify the repository. Here is an example:\n\n```\nhttps://github.com/singularityhub/sregistry containers,singularity\n```\n\n## License\n\n[![Creative Commons License](http://mirrors.creativecommons.org/presskit/buttons/88x31/svg/cc-zero.svg)](https://creativecommons.org/publicdomain/zero/1.0/)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Frseng%2Fawesome-rseng","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Frseng%2Fawesome-rseng","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Frseng%2Fawesome-rseng/lists"}