{"id":18982560,"url":"https://github.com/rtahmasbi/geneevolve","last_synced_at":"2025-04-19T20:08:02.813Z","repository":{"id":201335141,"uuid":"53280584","full_name":"rtahmasbi/GeneEvolve","owner":"rtahmasbi","description":"A fast and memory efficient forward-time simulator of realistic whole-genome sequence and SNP data","archived":false,"fork":false,"pushed_at":"2019-01-29T01:04:43.000Z","size":24645,"stargazers_count":6,"open_issues_count":1,"forks_count":4,"subscribers_count":3,"default_branch":"master","last_synced_at":"2023-10-19T18:56:48.469Z","etag":null,"topics":["bioinformatics","cpp","genomics","sequencing","simulator","snp-data","statistics"],"latest_commit_sha":null,"homepage":"","language":"C++","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/rtahmasbi.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2016-03-06T22:53:50.000Z","updated_at":"2023-10-19T19:20:27.228Z","dependencies_parsed_at":null,"dependency_job_id":"7e4d2a54-440f-47d0-bd35-1fea8468c15d","html_url":"https://github.com/rtahmasbi/GeneEvolve","commit_stats":null,"previous_names":["rtahmasbi/geneevolve"],"tags_count":null,"template":null,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rtahmasbi%2FGeneEvolve","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rtahmasbi%2FGeneEvolve/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rtahmasbi%2FGeneEvolve/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rtahmasbi%2FGeneEvolve/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/rtahmasbi","download_url":"https://codeload.github.com/rtahmasbi/GeneEvolve/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":223713504,"owners_count":17190498,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioinformatics","cpp","genomics","sequencing","simulator","snp-data","statistics"],"created_at":"2024-11-08T16:14:00.898Z","updated_at":"2024-11-08T16:14:01.405Z","avatar_url":"https://github.com/rtahmasbi.png","language":"C++","funding_links":[],"categories":[],"sub_categories":[],"readme":"# GeneEvolve\nA fast and memory efficient forward-time simulator of realistic whole-genome sequence and SNP data\n\n\nThis work is published in Bioinformatics (2017), click [here](https://academic.oup.com/bioinformatics/article/33/2/294/2525714) to download it.\n\n\n\nGeneEvolve is a user-friendly and efficient population genetics simulator that handles complex evolutionary scenarios and generates individual-level phenotypes and realistic whole-genome sequence or SNP data.\nGeneEvolve runs forward-in-time, which allows it to provide a wide range of scenarios for mating systems, selection, population size and structure, migration, recombination, and environmental effects.\n\n\n# Download\nTo download “GeneEvolve”, you can push the green button “Clone or Download” and then “Download ZIP”.\n\nOr, you can type the following commands in the terminal:\n    \n    git clone https://github.com/rtahmasbi/GeneEvolve\n    cd GeneEvolve\n    \n    \nOr,\n\n    wget https://github.com/rtahmasbi/GeneEvolve/archive/master.zip\n    unzip master\n    cd GeneEvolve-master\n\n\n# Binary files\nThe compiled files for Linux and Mac users are availible in the main direcory: `GeneEvolve_Linux` and `GeneEvolve_Mac`\n\n\n\n# Compile\nTo compile GeneEvolve, run the following commands:\n\n    make\n    cd bin\n    ./GeneEvolve --help\n\n\n\n# Documentation\nThe Documentation file is available in the main directory: `GeneEvolveDocumentation.pdf`.\n\n\n# Examples\nThere is `Examples.zip` file in the main directory. Detailed explanation for using these examples are in the documentation file: `GeneEvolveDocumentation.pdf`.\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Frtahmasbi%2Fgeneevolve","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Frtahmasbi%2Fgeneevolve","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Frtahmasbi%2Fgeneevolve/lists"}