{"id":36236557,"url":"https://github.com/rustcodepro/phyloevolve","last_synced_at":"2026-01-11T06:00:52.380Z","repository":{"id":275348551,"uuid":"925824845","full_name":"rustcodepro/phyloevolve","owner":"rustcodepro","description":"phylogenomics for genomics","archived":false,"fork":false,"pushed_at":"2025-09-29T11:30:58.000Z","size":197,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":0,"default_branch":"main","last_synced_at":"2025-11-27T19:44:12.862Z","etag":null,"topics":["align-dna-sequences","alignmentcapture","alignments","genome-analysis","genome-annotation","genomealignment","graph","proteinaligner"],"latest_commit_sha":null,"homepage":"","language":"Rust","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/rustcodepro.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2025-02-01T20:47:22.000Z","updated_at":"2025-09-29T11:31:01.000Z","dependencies_parsed_at":"2025-02-07T07:30:06.090Z","dependency_job_id":"3c2b1e3d-8469-4112-90ab-d29cbca59994","html_url":"https://github.com/rustcodepro/phyloevolve","commit_stats":null,"previous_names":["sciencegenome/graphtools","sciencegenome/phylogenomicstools","sciencegenome/phyloevolve","ibchgenomic/phyloevolve","genomicssport/phyloevolve","omicscode/phyloevolve"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/rustcodepro/phyloevolve","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rustcodepro%2Fphyloevolve","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rustcodepro%2Fphyloevolve/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rustcodepro%2Fphyloevolve/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rustcodepro%2Fphyloevolve/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/rustcodepro","download_url":"https://codeload.github.com/rustcodepro/phyloevolve/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rustcodepro%2Fphyloevolve/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":28293188,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-01-11T04:44:51.577Z","status":"ssl_error","status_checked_at":"2026-01-11T04:44:44.232Z","response_time":60,"last_error":"SSL_read: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["align-dna-sequences","alignmentcapture","alignments","genome-analysis","genome-annotation","genomealignment","graph","proteinaligner"],"created_at":"2026-01-11T06:00:40.264Z","updated_at":"2026-01-11T06:00:52.310Z","avatar_url":"https://github.com/rustcodepro.png","language":"Rust","readme":"# phyloevolve\n\n - rust based alignment kit for genome, metagenome, pangenome. \n- It gives you all the alignments functionalities and also gives you colour coded alignment for each alignment \n     and sub-alignment region. check the alignment view and alignment-clipview.\n\n ```\n cargo build\n ```\n ```\n _               _           _____  __     __   ___    _      __     __  _____\n_ __   | |__    _   _  | |   ___   | ____| \\ \\   / /  / _ \\  | |     \\ \\   / / | ____|\n| '_ \\  | '_ \\  | | | | | |  / _ \\  |  _|    \\ \\ / /  | | | | | |      \\ \\ / /  |  _|\n| |_) | | | | | | |_| | | | | (_) | | |___    \\ V /   | |_| | | |___    \\ V /   | |___\n| .__/  |_| |_|  \\__, | |_|  \\___/  |_____|    \\_/     \\___/  |_____|    \\_/    |_____|\n|_|              |___/\n\nrust-phylogenomicstools\n************************************************\nAuthor Gaurav Sablok,\nEmail: codeprog@icloud.com\n************************************************\n\nUsage: phyloEvolve \u003cCOMMAND\u003e\n\nCommands:\nalignmerge          merge all the alignment into a single string\nalignmergeinterval  alignmerge the specific region of the alignment\nsame-alignment      remove same alignment\nalignmentstats      alignmentstats\nfilter-site         filter the sites with the given base\nfilter-all          removes same bases across all the alignment\nfilter-block        collineratiy block based alignment filtering\nalignment-view      allows for the view of the alignment\nalignment-clipview  allows for the embedded view of the clipped Alignment\nsitereplace         replace the specific sites based on the site probability\nprotein-stat        estimate the protein stats\nindelreplace        indel substituter\nmotif-search        search for the specific protein and the nucleotide motifs\nup-down-stream      specific part of the alignment and the upstream and the downstream of alignment\nsite-alignment      extract the places of the specified base for LD analysis\nplotter             frequency plot for the alignments\nnucleotidecolour    color coded map\nproteomecolour      proteome heatmap\nhelp                Print this message or the help of the given subcommand(s)\n\nOptions:\n-h, --help     Print help\n-V, --version  Print version\n ```\n\n  Gaurav Sablok \\\n  codeprog@icloud.com\n","funding_links":[],"categories":[],"sub_categories":[],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Frustcodepro%2Fphyloevolve","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Frustcodepro%2Fphyloevolve","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Frustcodepro%2Fphyloevolve/lists"}